Scyliorhinus torazame (cloudy catshark): 140430861
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Entry
140430861 CDS
T11303
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140430861 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stoz03019
]
140430861 (cnot1)
Messenger RNA biogenesis [BR:
stoz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140430861 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140430861 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
SCRE
Motif
Other DBs
NCBI-GeneID:
140430861
NCBI-ProteinID:
XP_072374716
LinkDB
All DBs
Position
10:complement(112709222..112986709)
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEISHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPYLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFALQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
TDSGGIAKTMDSSLADFMQEVGYGFCTNAEECRQIILQFGVREVTASQVARVLGMMARTH
SGLTDGISLQSISAPSSGIWSDGKDKSDSAQAHTWNVEIFIDVVKEVNPNLNFKEVTYEL
DHPGFILRDSKGLQIAVYGIQKGMGIEVFPVDLLYRPWKHAEGQLSFIQHSLMNPDIFCF
ADYPCHTVVTDILKAPPEDDNREIATWKSLDLIETLLRLSELGQYEQVKQLFNFPIKHCP
DMLVLALLQINPTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHA
MAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWL
TDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACLQACAGS
VSQELSETILTMVANCGNVMNKARQPPPGVMPKVRAPSTSSIETMSPVQVQIIDSLSGMA
SLTIGGSAASLTPSMQSFTTNLSSAFNTPQSPAKAFPPLSTPNQTTPFSGIGGLPSQLPG
SLGTGSLTGMGTGGLALPTVNTDPFGQRKMSTSGLNPQTFQQSKMKPSDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQ
AQAQAQAQNKTPLTRQVSAIVTTSTTTTVTKATTVTRPTGVSFKKDVPPSINTTNIETLL
VATDQAERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRV
SIEPNFHSLYSNFMDTLKNSEFNKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILHIDLDVKSLLLEAYMKGQQEMLYVVPFVAKVLESSVRSMVFRPPNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGTLLKEKEKLTNLEEQLSAP
KRESKIPEELPVVVTTAAPVTPATTTTCTSTVPPQPQFSYHDINVYSLAALAPHITVNPN
IPLFQAHPQLKSYVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRV
AAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFATALRAASPQQREMMEQAAAQIAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQIYDKCITEL
EQHLHAIPPTLAMNPQAQALRNLLEAVVMARNSRDAIAALGLLQKAVEGLLDATSGADPD
LLLRYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVEAVELLIRHHLVNM
QQYDIHLAQSMENGLNYMAVAFAMQLVKFLLVDERSISHVTEADLFNTIETLMRISAHSR
GNAPEGLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQQEQQH
NPTANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPYLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSRTRVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggacaacctg
accaagaagaattacaaatccagccagcaggagatctctcatattgtgaaccgacacggc
cccgaggcagacagacatttattacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagcggtaaagatttccatcagactcagtttctgattcaggagtgtgcgtcg
ctgatcaccaagccaaactttatctcgacgctgtgctacgccattgacaatccattgcac
tatcagaagagtctgaaaccttcaccctatctgtttactcagcttagtaaagtgctcaag
ttaagcaaggtccaagaggtcatctttggccttgcattgctgaattcttctagctcagat
ctgcgggggtttgctctccagtttgtgaaacagaagctcccagacctcctgcgatcttac
atcgacgcagacgtaagtgggaaccaagaaggtggctttcaggatattgcaatagaggtc
ctgcacctgctcctctcccatctcctttttgggcaaaaaggagcttttggtgttgggcag
gaacagattgacgctttccttaagacattgcgcagagattttccgcaagagcgttgccct
gtggtgcttgcaccactgctatatcctgaaaaacgggacattctgatggataggatcctg
actgattcgggagggatagcgaaaacgatggacagctcactagcagattttatgcaagaa
gtaggctatggcttttgcacaaatgctgaagaatgccggcaaatcattttgcagtttggg
gttcgggaagtgacggcttctcaggttgccagggtgttggggatgatggctcggacgcat
tcaggcctgactgatggcatttccttacaatctatctccgccccgagtagtggaatctgg
agcgatgggaaggataaaagtgactctgcacaggcccatacatggaatgtagaaatattt
attgatgtcgtgaaagaagtgaatccaaatctgaattttaaggaagtgacttatgaactg
gatcacccaggattcatccttcgtgacagcaaaggtctgcaaatagcagtgtatggaatc
caaaaagggatgggaattgaagtatttcctgttgatctcctctacaggccttggaaacat
gcagaaggacagctctcctttattcaacattcattaatgaacccagatatcttctgtttt
gctgactatccttgtcatactgtggtgaccgatattttgaaagcccctccagaggatgat
aaccgagaaattgctacatggaaaagcctggacctcattgagaccttactgcgtctttcc
gagctgggacagtatgagcaggtcaaacagctctttaacttccccatcaagcactgcccg
gacatgctggtactggccttactgcagatcaacccgacctggcacactctgcgccatgag
ctcatttccacactgatgccaattttcctgggcaatcatccgaattctgccattatcttg
cactatgcatggcacggacagggtcaatccccctcaatccgacagctgatcatgcacgca
atggcagagtggtacatgcgtggtgagcaatatgaccaggccaagctctcccgcattcta
gatgtagctcaagacttgaaggccttgtctatgctgctaaatggtactccatttgccttt
gttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgataaatggtta
actgataagattcgtgagcatggggaaccatttatccaggcatgtgtgacgttcctaaag
agacggtgtccttccattatgggtggactggccccagaaaaggaacagcccaagagtgct
cagcttcctccagaaacactggctaccatgttggcttgcttgcaagcctgtgcagggagt
gtttcacaggaactgtcagagaccatcctcacgatggtggccaactgtggcaatgtcatg
aataaagcccgtcaaccacctcctggagtaatgcccaaggtccgcgcacctagtaccagc
agtatagaaaccatgtcacctgtacaggtacaaataattgactctttgtctggcatggct
tcgttgaccattggtggatcagctgcatctctcactccaagtatgcagagtttcactact
aatttaagttctgcattcaacacccctcaatcaccagcaaaagcctttcctccactctct
acaccaaaccagacaactcctttcagtggaattggcggtcttccttctcagctcccaggt
agtttgggtacagggagtttgactggcatgggaactggtggacttgcactaccaactgtg
aacactgatccctttggacagcgaaagatgagcacatctggactgaacccacagacattc
cagcagagtaagatgaaaccttctgacctttctcaggtatggccagaggcaaatcagcac
tttagcaaggagattgatgacgaagcaaacagctacttccaacgtatctacaaccatcca
ccccatcctaccatgtctgttgatgaggttttggaaatgctgcagaggtttaaggattcc
agcattaagcgtgaaagggaggtttttaactgtatgctacgtaacctctttgaggagtat
cgcttcttccctcaatacccagataaggagctgcacatcactgcctgcctgtttggtgga
attatcgaaaaggggctggtcacctatatggcattgggacttgcactgcgctatgttctc
gaggcattgcgcaaaccttttgactccaagatgtactactttggtattgctgcactagac
agatttaaaaatagattaaaggactatccgcagtattgtcagcacttggcttctataggc
cacttcttacagtttcctcatcatttacaggagtacattgagtatggccagcagtccaga
gaccctcctgtgaaaatgcaaggtagcattacaacccctggcagtattgcattggcccag
gctcaggcacaagcacaggctcagaataagacccccctcaccagacaagtcagcgccatt
gtaaccacgtccacaaccactaccgtgaccaaagccactacagttaccaggccgactgga
gtgagctttaagaaagatgtacctccctccattaatacaactaatatagaaacattgttg
gtggccacagaccaggcagagaggatagtggaaccacctgagaatattcaagaaaaagtg
gcttttatcttcaacaatctctcgcagtccaacatgacacagaaggtggaagagctaaaa
gagactgtgaaagatgagtttatgccctgggtatcccaatatttggtcatgaagagagtc
agcattgaacctaactttcacagtctctactcaaactttatggacacgttgaagaattct
gagtttaacaaaatggtactcaccgagacatacagaaacatcaaggtactgttgacatct
gacaaggctgcagcaaacttttcagaccggtcgctgttgaagaacctgggccactggttg
ggcatgataacgctagccaaaaataaacccattttgcacattgatctcgatgtgaaatct
ttgctgctggaggcttatatgaaaggtcagcaagagatgctctacgttgtcccttttgtt
gccaaagttttagaatcgagcgttaggagtatggtttttagacctccaaatccttggaca
atggccatcatgaatgtactagcagagctgcatcaagagcatgatttgaagttaaacctg
aagtttgaaattgaagtgttgtgtaaaaatctggctttggatatcaacgacttgaagcct
ggaaccttactaaaggagaaagaaaaattgacaaatctagaggaacaactctctgctcca
aagagagagtccaaaataccagaggagctgcctgtagttgtcaccactgctgcaccagtg
actccggccacaaccaccacttgtacgtctacggtccctccacagccacagttcagctac
cacgacatcaatgtgtattcactggctgccttggctcctcacattacagtcaacccaaat
attcctttgttccaagcccaccctcaactgaaatcatacgttcggcaggcaatagagcgt
gctgtgcaggagcttgttcatcctgttgttgaccgttctatcaagattgccatgaccaca
tgtgaacagatagtcaggaaagattttgccttggattctgaggagtcacggatgcgagtt
gcagcccatcacatgatgcgtaacctcactgcaggaatggctatgattacatgcagggag
ccattgctaatgagcattgctacaaacctaaagaataattttgccactgcattacgggct
gcatccccacaacagagggaaatgatggaacaggcggctgcacagatagcacaagacaac
tgtgagctagcgtgctgttttattcagaaaacagctgttgaaaaggcaggccctgaaatg
gacaaacggcttgcaacagaatttgaacttcgaaaacatgccagacaggagggtcggcgt
tactgtgatcctgtggtgctcacttaccaggctgagcgtatgcccgagcaaatcagattg
aaggtgggaggtgtagatcctaaacagctagctgtgtacgaagagtttgcacgcaacatc
ccaggatttctgcctagcaatgacatctctcagcccactggtttcttggccaagcccatg
cagcaagcttgggcaactgacgatattgcccagatttatgacaagtgcatcacagaactg
gagcagcatctacatgcaattccaccaactctggccatgaaccctcaggctcaggcactc
cgtaacttactggaggctgtggtaatggccaggaactcccgtgatgctattgctgctcta
ggcctcttgcagaaggctgtcgagggactgctggatgccacaagtggtgcggacccagat
ctcttgcttcgctatcgcgaatgtcatttgttggttttgaaagccctgcaggatggtcgt
gcctatgggtctcagtggtgcaacaacaaaatcaccaggtgcctgattgagtgtcgtgac
gagtacaaatataatgtggaggctgtagaactgctcattcgacaccatctggtcaacatg
cagcagtatgacatccatttagcccagtcaatggaaaatggcttgaattacatggccgtg
gccttcgcaatgcagttggttaagtttttgttggtcgacgagaggagcattagtcacgtt
actgaagcagatctgttcaacaccattgaaacacttatgaggataagtgctcattccaga
ggaaatgcacctgaaggactgccgcagcttatggatctgcttagagccaactatgaagct
atgatggaccgtgcacacggtggccccaactttatgatgcactctgggatatcacaggcc
tccgaatatgatgacccaccagggcttcgggagaaagcggagtatttgttgagagagtgg
gtaaacctataccattcagcagcagctggaagggacagcaccaaagcattctccgccttt
gttgggcagatgcaccagcagggaatcctgaagaccgatgacctgattactcgctttttc
cgactatgtactgaaatgtgtgttgaaattagttatcgtgcgcagcaggagcaacagcac
aatcccacagccaatcccacgatgatcagggccaagtgctaccacaacctggatgcgttt
gtcagattgatagccctgctggtcaagcactctggagaggccaccaacacagtcactaaa
atcaaccttctcaacaaggtactggggattgtcgttggagtcctactacaagatcatgaa
gtacgtcagagtgaatttcagcagctgccatatcatcgaatcttcatcatgttgttgctg
gagctaaatgctcctgagcatgtcctggaaactatcaacttccagacactgaccgctttc
tgcaacacatttcacattttgcggcctactaaagctcctggctttgtctatgcctggctg
gaactgatttcccatcggatcttcattgcaagaatgctggcgcatacaccccaacagaag
ggctggcccatgtatgcccagctgctcatcgatctgtttaagttcctggctccttacttg
aggaacgtggagttgacaaaacctatgcaaattctttacaagggcactttgcgtgttttg
cttgtccttttgcacgactttccagagttcctctgtgactaccattacggcttctgcgat
gtgatcccaccaaattgtattcagctgcgtaacctgatcctgagtgccttcccacggaat
atgcgactgccagatccgttcacacctaatctaaaggtggatatgctgagtgaaatcaac
attgctcctcggatattgaccaacttcacaggagtgatgccacctcagtttaagaaggac
ttggattcctatttgaagacccgttcaccggtcacctttctctcagagctacgcagtaac
ctgcaggtgagcaggacaagggtatcaaatgaacctggtaatcggtacaacatccaacta
ataaatgccctggtgctgtatgtgggaacgcaggcgattgctcacattcataacaagggc
agcacgccatccatgagcaccatcacacattctgcccacatggacatcttccagaacctg
gctgtggaccttgacacagaaggtcggtatttgttcctgaatgccattgccaatcagctg
cgttacccaaacagccacacccactatttcagctgtactatgctgtatctgtttgctgaa
gccaacacagaagctatacaggagcagatcaccagggtgcttttggagaggctaattgta
aacaggcctcatccgtgggggctcctcatcacctttattgagctgattaaaaacccagcc
ttcaaattctggaaccacgagtttgtccactgtgcacctgagattgaaaagttgttccag
tctgtagctcagtgttgtatgggacagaagcaggcacaacaagtaatggaaggcactggc
gccagttaa
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integrated database retrieval system
