Streptococcus troglodytae: SRT_13220
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Entry
SRT_13220 CDS
T06912
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
strg
Streptococcus troglodytae
Pathway
strg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
strg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SRT_13220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strg03021
]
SRT_13220 (rpoD)
Transcription machinery [BR:
strg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SRT_13220 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DprA_WH
DUF2316
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
BAQ24583
UniProt:
A0A1L7LK54
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All DBs
Position
complement(1338174..1339289)
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AA seq
371 aa
AA seq
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MVNNKKKTSSTFNVQVADFIRNHKKEGVAVDDEVTEKLVIPFELEAEQIDDLLERLTDGG
ISITDREGNPSTKYAVEEIKPEELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEK
ELAIAVENGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYS
KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQ
IAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLRE
QLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLRHPS
RSKQLRDFVED
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggtaaataataagaaaaaaacatcaagtacttttaatgttcaagttgcagattttatt
cgcaaccataaaaaagagggagttgctgttgatgatgaagttactgaaaaattagttatc
ccttttgaacttgaagcagagcagattgatgatttgttggaacgtttgacagatggtggt
atctcaattactgacagagaaggcaatccttctaccaaatatgctgttgaagaaattaaa
ccagaagaattaaccgatgaagaattattgggcagtaactctgccaaggttaatgatcct
gtccgcatgtatttaaaagaaattggcgttgttcctcttttgactaatgaagaagaaaaa
gaactagctattgctgttgaaaatggcgatcttgaagcaaagcaacgcttggcagaagct
aatttgcgtttggttgtttccattgcaaaacgatacgtaggacgcggcatgcagtttctt
gatctcattcaagaaggtaatatgggtttgatgaaggcagttgataaatttgattattcc
aaaggtttcaagttttcaacctatgcaacttggtggattcgtcaagcgatcacacgtgcc
attgcagaccaagcacgtacgattcgtattccagtgcatatggtggaaacgatcaataag
ctggtgcgtgagcagcgcaatcttcttcaagaactaggtcaagatccaacaccggagcaa
attgctgagcgaatggatatgacaccagataaagtgcgtgaaattttaaaaattgctcaa
gaaccagtgtctcttgaaacaccaattggtgaagaagatgacagccatctaggtgatttt
attgaagatgaagtgatcgaaaatcccgttgactatacaactcgtgttgtcttgcgtgag
cagttagatgaagttttggatactcttactgatcgtgaagaaaatgtccttcgtctgcgt
tttgggcttgatgatggaaaaatgcggacgcttgaagatgtcggtaaagtctttgatgtt
actcgtgaacgtattcgtcaaattgaggctaaagcacttcgcaagctgcgtcaccctagt
cgcagcaagcaattacgtgactttgttgaagattaa
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