Streptococcus sp. NPS 308: SNAG_1659
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Entry
SNAG_1659 CDS
T05541
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
strn
Streptococcus sp. NPS 308
Pathway
strn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
strn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SNAG_1659 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strn03021
]
SNAG_1659 (rpoC)
03400 DNA repair and recombination proteins [BR:
strn03400
]
SNAG_1659 (rpoC)
Enzymes [BR:
strn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SNAG_1659 (rpoC)
Transcription machinery [BR:
strn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SNAG_1659 (rpoC)
DNA repair and recombination proteins [BR:
strn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SNAG_1659 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Dehydratase_LU
Motif
Other DBs
NCBI-ProteinID:
BAV80528
LinkDB
All DBs
Position
complement(1670864..1674529)
Genome browser
AA seq
1221 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYRGIVCDRCGVEVTRTKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLL
KQVDLEKEIAALKEELKTATGQKRVKAIRRLDVLDAFYKSGNKPEWMILNILPVIPPDLR
PMLQLDGGRFASSDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIVQNVKAAKRLVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEAGREGEGMVFKDRDEAVMAYRNGYVHLHSRVGI
ATDSLNKPWTEEQKHKVLLTTVGKILFNDIMPEGLPYLQEPTNANLTEGVPDKYFLPLGG
NIKEAISKLEINAPFKKKNLGNIIAEIFKRFRTTETSALLDRMKNLGYHHSTLAGLTVGI
ADIPVVEDKAEIIEESHKRVEQITKQFRRGMITDDERYNAVTAEWRAAREKLEKRLVANQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRSIAEGKEMIESLE
ERLNGRYTKKTVKHPETGAVIIGPNELITEDKAREIVNAGVEEVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRVQEI
FEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVVPFTARMRVEVGDQV
SRGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGDKHIEVMVRQMIRKV
RVMDPGDTDLLMGTLMDINDFTDANKDVLIAGGVPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEAAYLAPEQ
EETELAPVEEAVEIQVEETVE
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
gtggttgatgtaaatcgttttaaaagtatgcaaatcaccctagcttctccaagcaaagtc
cgttcatggtcttatggagaagtcaaaaaacctgaaacaatcaattaccgtaccttgaaa
ccagaacgtgaaggactctttgacgaagtgatctttggtcctacaaaagactgggaatgt
gcttgtggcaagtacaaacgcattcgttacagagggattgtttgtgaccgctgtggggtt
gaagtaacgcgtacaaaagttcgtcgtgagcgtatggggcacatcgagttgaaagctcct
gtatctcacatctggtacttcaaggggattccaagccgtatgggcttgacccttgatatg
agccctcgtgccctcgaggaagtgatctactttgcggcttatgtggtgattgatccgaag
gatacaccacttgagcacaagtcaatcatgacagagcgtgaataccgtgagcgcttgcgt
gagtatggttatggatcattcgttgccaagatgggtgccgaagctatccaagacctcttg
aaacaagtagatcttgaaaaagaaattgcggcactcaaagaagagttgaaaacagctact
ggacaaaaacgtgtcaaagccatccgtcgtttggatgttttggatgccttttacaagtct
ggaaacaaacctgaatggatgattctcaacatccttccagttattccaccagaccttcgt
ccaatgttgcagttggatggtggccgttttgcctcatctgacttgaacgacctttaccgc
cgtgttatcaaccgtaacaaccgcttggctcgtttgcttgagttgaatgcaccaggtatc
atcgttcaaaatgagaagcgtatgcttcaagaagcagttgacgctttgattgataatggt
cgtcgtggtcgtccgatcacaggaccaggtagccgtccactgaaatcattgagtcacatg
cttaaaggtaaacaaggacgcttccgtcaaaacttgctcggtaaacgtgttgacttctca
ggacgttccgttatcgccgttggtccaactcttaagatgtaccaatgtggtgtgccacgt
gaaatggcaatcgagctctttaaaccattcgtcatgcgtgaaatcgttgcccgtgacatc
gtgcaaaacgtgaaagcagcgaaacgcttggtggaacgcggagacgaacgtatctgggat
attcttgaagaagtaatcaaagaacacccagtacttttgaaccgcgcgcctacccttcac
cgtttgggtatccaagctttcgagccagtcttgattgatggtaaggcccttcgcttgcac
ccgcttgtctgtgaagcctacaatgccgactttgacggggaccaaatggccatccacgta
ccgctttcagaagaagcccaagcagaagctcgtatcttgatgttggctgctgagcacatc
ttgaacccgaaagatggtaaaccagttgttactccatctcaggacatggttttgggtaac
tactacttgaccatggaagaagctggtcgtgaaggtgaaggaatggtcttcaaagaccgt
gacgaagcggttatggcttaccgcaatggttatgttcacctccattcacgtgttggtatc
gcgacagatagcctcaacaaaccttggactgaagaacaaaagcacaaggtcttgctgaca
acagttggtaaaatcctcttcaacgacatcatgccagagggtctgccttacttgcaagaa
ccaacaaatgccaacttgacagaaggtgttccagataagtacttcttgccactaggtgga
aatatcaaggaagctattagcaaacttgaaattaacgccccattcaagaagaaaaacctt
gggaatatcatcgctgaaatcttcaaacgtttccgtacgacagaaacttctgccctactt
gaccgcatgaagaacctcggttaccaccactcaactcttgcaggtttgacagtgggtatt
gccgatatcccagttgttgaagacaaggctgaaatcatcgaagaatcacacaaacgtgta
gaacaaatcaccaaacaattccgtcgtggtatgatcacagacgacgagcgctacaacgct
gttacagctgaatggcgtgcagcccgtgaaaaattggagaaacgcttggttgccaaccaa
gatcctaagaacccaatcgttatgatgatggactctggagcccgtggtaacatctcaaac
ttctcacagcttgccggtatgcgtggtctgatggccgctccgaacggacgtatcatggaa
ttgccaatcctttcaaacttccgcgaaggtttgtcagtactcgaaatgttcttctcaact
cacggtgcccgtaaaggtatgaccgatacggcccttaagacagccgactcaggttacttg
actcgtcgtttggttgacgttgcccaagacgttatcatccgtgaggacgactgtggaaca
gatcgtggtctcttgatccgctctatcgcagaaggaaaagagatgatcgagtctcttgaa
gagcgtctcaatggtcgttacactaagaaaactgttaaacatccagaaactggtgcagtg
atcatcggtccaaatgagttgattacagaagacaaggcgcgtgaaattgtcaatgctggt
gtggaagaagttactatccgctctgtatttacatgtaacactcgtcatggtgtctgccgt
cactgttacggtatcaacttggcgacaggtgatgcggttgaagttggtgaagcagttggt
acaatcgctgcccaatctatcggggaacctggtacacagcttacaatgcgtaccttccac
acgggtggggttgcctcaaataccgatatcactcagggtcttcctcgtgtccaagaaatc
tttgaagcccgcaatcctaaaggggaagcggtcatcacagaggttaaaggacaagttact
gctattgaagaagacgcttcaactcgtactaagaaagtcttcgttaagggtgaaactgga
gaaggcgaatacgtggtaccatttacagcacgtatgcgtgtcgaagttggagaccaagtc
tctcgcggtgcagcattgacagaaggttctatccaaccaaaacgtctccttgctgttcgt
gatgtcttgtcagttgaaacttaccttctcggtgaagtacaaaaagtttaccgtagccaa
ggggtagaaatcggtgacaaacacatcgaggtaatggttcgtcaaatgatccgtaaagtt
cgtgtcatggatccaggtgacaccgaccttcttatgggtaccctcatggacatcaacgac
tttacagatgctaacaaggatgttcttatcgcaggtggagttccagcgactggtcgccca
gttcttatgggaatcaccaaagcctcacttgaaactaacagtttcttgtcagcggcttcc
ttccaggaaacaacccgtgtccttactgatgcggccatccgtggtaagaaagaccatctc
cttggactcaaggaaaatgttatcatcggtaagatcatcccagcaggtactggtatggct
cgctaccgtaaccttgaaccacaagctatcaatgaagcagcctatctggctccagaacaa
gaagagacagaacttgctccagtagaggaagctgtggaaatccaagttgaagaaacagta
gaataa
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integrated database retrieval system
