Streptomyces sp. PAMC 26508: F750_2702
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Entry
F750_2702 CDS
T02619
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
strp
Streptomyces sp. PAMC 26508
Pathway
strp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
strp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F750_2702 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strp03400
]
F750_2702 (ligD)
Enzymes [BR:
strp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F750_2702 (ligD)
DNA repair and recombination proteins [BR:
strp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F750_2702 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGJ55183
LinkDB
All DBs
Position
2828283..2829257
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AA seq
324 aa
AA seq
DB search
MATLPLIAPMLATPGRLPPAAVDEQWAYEVKQDGQRAMAYLPGDGSIRLLARSGAVITPA
YPDLVALGPALGGVPAVLDGEIVALDEQGRSDFERLQSRMGLSGSPAKAARAAQRVPAHL
VLFDVVFLGDRSLVRLPWTERRAALEGLGLDGPHWSTPAVVVGHGEQALTMTREAGLEGL
VAKRLGSVYEPGVRARTWIKIRHARTADVIVGGWVPGRGRLGGLPGALLVGERHPGGLRY
AGSVGTGWSDAERARLAELLRVAAVDDCPFDDTPPVAGARWVLPRLVGEVRYATRTKAGR
LRQPSWHRLRPDLAPDDLEPDGLG
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctgcccctgatcgcccccatgctcgccaccccgggccggctgccgcccgcc
gccgtcgacgagcagtgggcgtacgaggtgaagcaggacggccagcgcgccatggcctat
ctgccgggggacggttcgatccggctgctggccaggtcaggggccgtcatcaccccggcg
tatccggatctggtggctctgggacccgcgctcgggggcgtaccggcggttctcgacggt
gagatcgtcgcgctggacgagcaggggcgcagcgacttcgagcggctgcagtcgcggatg
ggactctccggatcacccgcgaaggccgcccgcgcggcgcagcgggtaccggcgcacctg
gtgctgttcgacgtcgtgttcctgggcgacaggagcctcgtacggctgccgtggacggag
cgcagggccgcgctcgaagggctcgggctggacgggccgcactggtcgacgcccgccgtg
gtcgtggggcacggcgagcaggccctgaccatgacgcgggaggccgggctggaggggctg
gtcgcgaagcggctgggctcggtgtacgaaccgggcgtccgcgcgcgtacctggatcaag
atccgccacgctcgcacggcggacgtgatcgtcggcggctgggtgccgggccggggccgg
ctgggcggcctgccgggggcgctgctggtcggcgaacggcacccgggcggcctgcgctac
gcgggcagcgtgggcaccgggtggagcgacgcggagagggccaggctcgccgaactgctc
cgggtcgccgccgtcgacgactgtccgttcgacgacacacccccggtggccggcgcccgg
tgggtgctgccccggctcgtcggcgaggtgcggtacgcgacccggacgaaggcggggcgg
ctgcgccagccgtcctggcaccggctgcggccggacctcgcgccggacgacctcgaaccg
gacggcctcgggtga
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