Streptomyces sp. PAMC 26508: F750_5465
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Entry
F750_5465 CDS
T02619
Name
(GenBank) secreted pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
strp
Streptomyces sp. PAMC 26508
Pathway
strp00040
Pentose and glucuronate interconversions
strp01100
Metabolic pathways
strp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
strp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
F750_5465
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
F750_5465
Enzymes [BR:
strp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
F750_5465
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
F5_F8_type_C
VasI
nec1
Motif
Other DBs
NCBI-ProteinID:
AGJ57894
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Position
5744821..5746368
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AA seq
515 aa
AA seq
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MRRPVALRLNAALATLAVAAATGVVLSMPEAASAAATGSATGYATQNGGTTGGAGGTTVR
ATTGTAIHTALCNRASSSTPITIQVEGTINHGNTAKVSGNSCNTAAGVIELKQISNVTLV
GVGSGAVFDQLGIHIRESSNIIIQNVTVKNVKKSGSPTSNGGDAIGMESDVRNVWVDHTT
LEASGGESEGYDGLFDMKDNTQYVTLSYSTLRNSGRGGLVGSSETELSNGYITYHHNLYE
NIDSRAPLLRGGIAHIYNNYYVKLNESGINSRAGARAKVDNNYFKNSKDVLGTFYTDAAG
YWQVGGNTFDNVTWSAKGSENNPAGPDPKSNTTVSIPYSYSLDNASCVPAIVAATAGANK
GLKVSDGSCSPTTPTPTPDPTDPTPDPTDPTQPGGTNLSIGAGSDGSSKASGSSYGNVRD
GDMSTFWSPAGSTGSISIKWGTATSVSKVNIREASGSTGAIGAWKVVNGDTGAVLTSGTG
AGAITVPKTSLKKITFEITGSSGTPKVAEFETYAG
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagacgaccagtcgcgctgcgactcaacgccgctctggccacgctggccgtggcggcc
gcgaccggcgtggtgctgtcgatgcccgaggcggcgtcggcggcggcgaccgggagtgcc
accggatacgcgacccagaacggcgggaccaccggcggcgccggcgggacgaccgtgcgg
gccaccacgggtaccgcgatccacacggccctgtgcaaccgggccagcagcagcaccccg
atcaccatccaggtcgagggcacgatcaaccacggcaacaccgccaaggtgtccgggaac
agctgcaacaccgcagccggtgtgatcgagctcaagcagatcagcaacgtcacgctcgtc
ggcgtcggcagcggtgccgtcttcgaccagctgggcatccacatccgtgagtccagcaac
atcatcatccagaacgtgaccgtcaagaacgtcaagaagtccggctcgcccacgtccaac
ggcggtgacgccatcggcatggagagcgacgtccgcaacgtctgggtcgaccacacgact
ctcgaggcctcgggcggcgagtcggagggctacgacggcctcttcgacatgaaggacaac
acccagtacgtcacgctgtcctacagcaccctgcgcaactccggccgtggcggcctggtc
ggttccagtgagaccgagctctcgaacggctacatcacgtaccaccacaacctgtacgag
aacatcgactcgcgggcgcccctgctgcgcggcggcatcgcccacatctacaacaactac
tacgtgaagctcaacgagtccggaatcaactcccgggccggagcgcgggccaaggtcgac
aacaactacttcaagaactccaaggacgtcctgggcacgttctacacggacgcggccgga
tactggcaggtcggcggcaacacgttcgacaacgtgacctggtccgccaagggcagcgag
aacaacccggccggtcccgacccgaagtccaacaccaccgtcagcatcccctactcctac
agcctggacaacgcgagctgcgtcccggcgatcgtggctgcgaccgcgggtgccaacaag
ggcctgaaggtgtcggacggcagctgctcgccgacgacgcccacccccacgccggacccc
acggacccgacgccggatccgacggaccccacccagcccggcggcaccaacctcagcatc
ggggccggatccgacggctccagcaaggcgagcggatccagctacggaaacgtgcgtgac
ggtgacatgagcaccttctggtcgccggccggatcgacgggttccatctcgatcaagtgg
gggaccgccacgtccgtgtcgaaggtcaacatccgtgaggcctccggttccaccggtgcc
atcggggcctggaaggtcgtcaacggtgacaccggcgcggttctcacctccgggaccggg
gccggtgccatcaccgtgcccaagacctcgctgaagaagatcaccttcgagatcaccggt
tcgtccgggacaccgaaggtcgccgagttcgagacgtacgccggatag
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