Salmo trutta (river trout): 115148662
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Entry
115148662 CDS
T08542
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
stru
Salmo trutta (river trout)
Pathway
stru04140
Autophagy - animal
stru04148
Efferocytosis
stru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115148662
04148 Efferocytosis
115148662
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115148662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
stru04131
]
115148662
Membrane trafficking [BR:
stru04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115148662
Hops complex
115148662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
zf-C3HC4_2
Beta-prop_WDR36-Utp21_1st
zf-rbx1
zf-RING_2
Beta-prop_WDR3_1st
zf-C3H2C3
zf-C3HC4
zf_RING_Vps8_fungal
TPR_GEMI5
Beta-prop_EML_2
zf-ANAPC11
WD40_CDC20-Fz
zf-RING_5
Rab11-FIP3
zf-RING-like
CC_Bre1
Kbp-5
DLP_helical
DivIC
Motif
Other DBs
NCBI-GeneID:
115148662
NCBI-ProteinID:
XP_029546615
Ensembl:
ENSSTUG00000014949
LinkDB
All DBs
Position
15:complement(23589691..23614316)
Genome browser
AA seq
929 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDAGDNGKNFVLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHSILVTVGQDEQGINPLVKVWNPDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLAFR
QQSKVTHLFVATLEKVHCYTLSVKEYPKLELDTHGCALRCSALTDPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDTKSPNKSEFGSRETSPSEKQILTIYD
LDNKFIAYSASFDDIIDVLAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIRKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHKWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PDGTTLLLKGLCTDYQPSRDAMERDSLDKGPAVAKKANSEEFISVFANNPRELRAFLEHM
IEVEPFSSQGVYDTLLELRLQDWAHEQDSERKKVLQGAALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEVCLWEQALGYFARKEED
CKAYISQVLEHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
RQYREETAHLRAEIQELRSSAKIFQKTKCSMCNSPLELPSVHFLCNHSFHQHCFESYAES
EAECPTCTPENRKVMDMLRAQDQKRDLHDHFTRQLRCSNDGFSVVADYFGRGVFNKLTLV
TDPPGSKVGVGSLEADLQRDLLIHTKRNA
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttcttacagtggagacgatttgtgttttttgataaagagacggtgaaggac
gctggagataatgggaagaacttcgtcctccccgttggcatatctgcatgtgactcgggc
cggggccacatcgttcttggagatatggacggtcagatctggtttttgacacgctcccta
cagttgtcctcctttcaggcttacaagctgagagtgacccacctgtaccagctcaagcag
cacagcattttggtcacggttgggcaggacgagcaaggaattaaccccctggtgaaggta
tggaatccggacaagcgtgacagcgggaatcctctgtgtaccagaatattcccagcaatt
cctgggaacaaaccaacagaggtgtcctgcctcagtgtacacgagaaccttaactttatg
gccattggcttcacagatggcagtgtggtgttgacaaagggtgacataacccgggacagg
cacagtaaaaccctgacactgcatgagggcacctgtccaatcacgggcctcgctttccgt
cagcagagcaaagtcactcacttatttgttgccactctggaaaaagtccattgctacact
ttatcggtgaaggagtacccaaaactggaactggacacccacggctgtgcgctgcgttgc
tctgcgctcacagacccctcccaggactcccagtttattgtcgcgggggacgagtgtgta
tacctttaccagcctgatgaacggggtccctgtttcgctttcgacgggcacaagctactg
gcccactggcaccggggctacctcctgctgctcaccagggacaccaagtctcccaacaag
tctgaatttgggagtagagagacatctccttcggagaaacaaatcttgacaatctacgac
ctggacaacaagttcattgcctacagcgcttcctttgatgacatcatcgacgttctggcc
gaatggggctccttctacatcctgactcgggatggaaagatgtttgtgctgcaggagaaa
gacactcagaccaagctagagatgctcttcaagaagaatctgtttgtgatggccatcaac
ctggctaagagccagcacttggacagtgacgggctgtctgagatcttcaggcagtacggt
gaccacctctacgtgaagggggaccacgatggagccatccaacagtacatccgcacaatc
aggaagctggagccctcttacgtaatccggaagtttctggatgctcagaggatccataac
ctgactgcctacctccaggccctgcaccggcagtcgctggccaatgccgaccacaccacc
ctgctgctaaactgctacaccaagctcaaggacagttctaagcttgaagagttcatcaag
agcagcgagagcgaggtccacttcgacgtggagattgccatcaaggtgctgcgccaggca
ggctaccacagtcacgcagtcttcctggccgagaggcaccagcaccacaagtggtacctg
aagatccagcttgaggacctgaagaactaccaggaggctttgcgctacattggacgactt
ccttttgaccaggcagagagcaacatgaaacgctacggcaagaccctgatgcaccacgtc
cccgacggcaccacactgcttctcaagggcctgtgtaccgactaccagcccagccgggat
gccatggaaagagacagcctggacaaaggcccggcagtggccaagaaggcaaattcagag
gagttcatctctgtgtttgctaataacccgcgggagctaagggccttcctggagcacatg
attgaggtggagcccttctcctctcagggggtgtatgacacactgctagaactacggctg
caggactgggcacatgaacaagactctgagaggaagaaggtcctgcagggggcagcactg
tccttgctgaggagcgacaacaccgtatttgacaaggccctcgtcctgtgccagatgcac
aacttcaaagaaggggtcctgtacctctatgagaagggcaaactgtaccagcagatcatg
cactaccacatgcagaatgaggagtatggcaaagtggtggaggcctgcaagcgctacggc
gaccaggaagtatgcttgtgggagcaggcgctgggatactttgcccgtaaagaggaggac
tgcaaggcctacatcagccaagtcctggagcacatcgaccagaacaacctgatgcctccc
ctattggtggtgcagacgctggcacacaactccacagccacgctgtcggtcatcaaggac
tacctgatcaacaagctgcagagggagagccagcagattgaggacgatgagcgcaagatc
cgccagtaccgtgaggagacggcccacctccgcgccgagatccaggaactcagaagcagc
gcaaaaattttccagaagaccaagtgcagcatgtgcaacagccccctcgagctgccctct
gttcacttcctgtgcaatcactccttccaccagcactgctttgagagctacgctgagagt
gaggccgagtgtcccacctgcacaccggaaaaccgtaaggtcatggacatgctgcgggcc
caggaccagaaacgagacctgcacgaccacttcaccagacagctgcggtgctccaatgat
ggtttctctgtggtggcggactactttggccgtggggttttcaacaagctgaccctggtc
accgacccgccgggcagcaaggtgggggtgggaagcctggaggcagacctgcagagggac
ctactcatccacaccaagaggaacgcttga
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