Salmo trutta (river trout): 115156302
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Entry
115156302 CDS
T08542
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
stru
Salmo trutta (river trout)
Pathway
stru04382
Cornified envelope formation
stru04510
Focal adhesion
stru04512
ECM-receptor interaction
stru04518
Integrin signaling
stru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115156302
04518 Integrin signaling
115156302
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115156302
09142 Cell motility
04820 Cytoskeleton in muscle cells
115156302
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115156302
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stru04147
]
115156302
00536 Glycosaminoglycan binding proteins [BR:
stru00536
]
115156302
Exosome [BR:
stru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115156302
Glycosaminoglycan binding proteins [BR:
stru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115156302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
115156302
NCBI-ProteinID:
XP_029559612
LinkDB
All DBs
Position
20:complement(28677732..28739218)
Genome browser
AA seq
1644 aa
AA seq
DB search
MMVHSGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQSGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGTPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGTPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EVGGNTITHFLPGPPGQRGETGDRGEKGSCVPYLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGEKGEKGPPAYVDSAPGSPGPPGLPGFQGERGFPGLQGDLGPPGRH
IEGPPGEKGQPGEIGQKGDRGANGDSLTGKPGQDGSIGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVHCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDKGLPGP
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVAPGLKGDKGGSGFVGTRGLPGVDGLPGKAG
QPGLPGPKGEPARDGIKGDRGLDGEPGITGPQGERGPPGVPGFGRQGEPGEKGTPGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGTPGPRGESGIRGLQGDRGPHGDPGMPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQGGFSGIPGTPGPKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLPGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGAGEPG
APGPMGPPGESGLFGRDGVKGDKGLPGFPGLDMPGPQGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGEAGPKGEMGVMGTPGTPGYQGPSGNPGSPGLRGDPGISGPRGEFGEPGPKGE
RGEQGLQGPAGNMTDVDMEHMKGEKGDLGDPGDPGYTGQKGYPGQPGVPGMPGKDGEPGT
PGQPGDKGDTGFPGEPGSIGYPGNKGGIGEMGYPGSIGTKGDKGIVGTPGHPGFRGTEGV
KGDKGQTGLPGVGVPGAPGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGASGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGTPGFEGSHGQPGERG
LPGPAMEGPKGDQGMPGKPGEPGTSGAPGPAGVPGSVGGKGEKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHTFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEIPHCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNYASRNDYSYWLTS
PEPMPMNMAPITGQSIRPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccatagtggtacgctggttctgttggtggctgtatcctacactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccagggaat
ccagggcttccgggtatccccgggcaagacggcccccctggatcgtcaggtattccaggg
tgcaacggaacaaagggagatcgagggacagatggacagtctggtttccctggtctacag
ggtcctcctggtatccctggactaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggaacacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggtacacctggccccccaggagaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccatcacag
gaagtaggaggaaataccattacgcatttcctccctggaccaccgggtcagcgaggcgag
acaggagacagaggagagaaaggttcttgcgttccctatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggtggccctggataccatggaacaccgggtgaaaaaggagagaaa
ggacctccagcatatgttgatagtgctcctggctctcccggcccccctggtctcccgggc
ttccaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcaggcat
attgaaggacctcccggagagaagggccaaccaggagagatcggtcagaagggagacagg
ggtgcaaatggggactctctcacaggaaagcctggacaagatggatccatcggaccccct
ggtcctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccacct
gggccccctggcccaccaggactacagggggagttgggacagaaaggtgatcagggagac
acgtgtgtgcactgtgaagccttcggcccccctggactccccggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacaaaggccttcctggacct
actgggcctgatggaagccctggtaattacggtactcctgggttgataggggcaccagga
gcccatggggagcctggggatatctacgtggctccagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
caaccaggcctgcccggacccaaaggagaacctgcccgagatggcatcaagggggaccgt
ggtctggatggggaacctgggatcactggaccacaaggagagaggggtcctcctggtgta
ccagggtttggccggcagggggagcctggagagaagggtacacctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccaaggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaatgccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctgggcctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacagggtggtttctctggaatacca
ggcacacctggtccaaaaggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgacaggtttccctggagagaaaggcaaccttggtctacctggtatt
cctggacaagagggacacacaggaccacctggagctcagggcatcaaaggtgaccacggt
ccccctggtcagcatggtggcactggaccccctggaccccctggagcaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctcttcggtcgtgacggtgtgaag
ggtgataagggtttgcctggctttcctggtctggacatgcccggccctcagggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctggggaggcaggccccaagggagagatgggagtcatggga
acacccggaacaccaggatatcagggtccttctgggaaccctggaagtccaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagcctggacccaaaggagag
aggggagagcaaggtctccaaggccctgctggcaacatgactgacgttgacatggagcac
atgaagggagagaaaggagacctcggagacccaggtgaccctggatacacgggacagaaa
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagcccggtaca
cctggtcagccaggtgataaaggagacacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctataggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacaaaccggtctgccaggtgttggagtaccaggagcccctggagag
aagggtcagttgggtctgcctggtttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatc
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagagaaaggagcgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccaggatcgtctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtacaccaggtttcgagggctcccatggccagccgggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggaatgccaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgttccaggcagcgtgggggggaag
ggagaaaagggggaccaaggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactgaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtccc
cctggtcctcctggcccccacaccttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctcgggtatccctggactgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgacggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggagattccacattgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgtccagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactatgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcaccggccagagcatcaggcccttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtacacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacaccagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggtgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccatcgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag
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