KEGG   Salmo trutta (river trout): 115176317
Entry
115176317         CDS       T08542                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
stru  Salmo trutta (river trout)
Pathway
stru03082  ATP-dependent chromatin remodeling
stru03083  Polycomb repressive complex
stru04110  Cell cycle
stru04330  Notch signaling pathway
stru04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:stru00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115176317
   03083 Polycomb repressive complex
    115176317
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    115176317
   04350 TGF-beta signaling pathway
    115176317
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    115176317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:stru03036]
    115176317
Enzymes [BR:stru01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     115176317
Chromosome and associated proteins [BR:stru03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     115176317
   HDAC complexes
    Sin3A-HDAC complex
     115176317
    BRAF-HDAC complex
     115176317
    REST complex
     115176317
    SHIP complex
     115176317
    MiDAC complex
     115176317
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     115176317
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    115176317
  Chromatin remodeling factors
   NuRD complex
    115176317
SSDB
Motif
Pfam: Hist_deacetyl RNA_polI_A34
Other DBs
NCBI-GeneID: 115176317
NCBI-ProteinID: XP_029592122
Ensembl: ENSSTUG00000042939
UniProt: A0A674DIS6
LinkDB
Position
36:complement(6658874..6675737)
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ANGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEKEAEEKKDVKEEKETEEKMDATGPTE
ETKTS
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctctcgtctgcaggaggaacaaagaagaaagtttgctattattatgatggcgac
gtcgggaattattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctcctgctcaactatgggctgtacaggaagatggagatatatagacctcacaag
gccaatggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttcc
atccgtccggacaacatgtcagaacacagcaagcagatgcagagatttaatgtaggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggctggagga
ctccatcacgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggagtggaagaggctttcttcaccacagaccgggtcatgactgtctccttc
cacaagtatggagaatacttccctggcaccggagacctgagggacattggagcagggaag
gggaagtactatgctgtaaactaccctctcagagacggcatcgacgacgagtcttatgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgtttcagcccagtgctgtagtg
ttacagtgtggagcggactctctctcaggagacaggcttggctgcttcaacctcaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgctgatgttg
ggtggtggaggttataccatccgtaacgtggcccgctgctggacctacgagaccgccgtg
gctctggacagcaccatacctaacgagctgccttacaatgattactttgagtactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagcggttgtttgagaacctgcgtatgctgccccatgccccgggg
gttcagatgcaggccatccctgaagacgctccacacccggactctggagatgaggaggac
gaggaccctgacaagcgcatctccatccgggcccatgataagaggatagcttgtgaagag
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaatgctgccaac
cacaagaagaccaagcgagtcaagaccgaggaagagaaagagaaggaggcagaggagaag
aaagatgtgaaagaggagaaagagacagaggagaagatggacgcaacagggccaacagag
gaaactaagacgtcttga

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