Salmo trutta (river trout): 115197447
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Entry
115197447 CDS
T08542
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115197447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115197447
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115197447
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115197447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
115197447
NCBI-ProteinID:
XP_029614838
Ensembl:
ENSSTUG00000001769
LinkDB
All DBs
Position
7:43026492..43068106
Genome browser
AA seq
2427 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVSQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQCFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMPAVTSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQAQSQPPKAPQPGQPSTLVTTATTTTTVAKTTTITRPTPGSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV
IFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLK
SLEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATG
PPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
SFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQP
TGFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALAR
NSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQI
TRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLL
VDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNF
MMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILK
TDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHS
GEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLET
INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
LFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRN
LILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPV
TFLSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTML
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEI
EKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttattacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctcccatcttctgtttggccagaagggagccagcggggtcggacaa
gagcagattgacgcgttcctcaagacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctataccctgaaaaacgggacattctgatggacaggattttg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtcttgatgaatgccgcaacataatcctacagtat
ggggtacgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctacgag
ctcgatcaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaag
catgctgaaggacagctgtcatttatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaatcgacatactgaaggccccacctgaggac
gataaccgagagatagccacctggaagagcctggacttggtggaaagcctcctgcgcctt
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgccatcatc
ttacactacgcctggcacggacagggccagtccccctctatccgtcagctgatcatgcac
tctatggctgagtggtacatgagaggggagcagtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgctaaatggtacaccatttgcc
ttcgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccttagaaaaggaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtctctcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccaccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagtatgcagtgctttcccaccccgctgggctctgctttcagcaacccccagtcgcca
gctaaggccttccctccactgtccaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcggtgactagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgctgagg
aacttgttcgaggagtaccgcttcttcccacagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gccctccgatatgtactcgaagccttgaggaaaccatttgggtccaaaatgtattatttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagctaccaccaccaccactgtcgccaaa
accactaccatcacccggcctacccctggcagcttcaagaaggatgtgccgccctccatc
aacaccacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaa
cccccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaac
atgacacagaaggttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtc
tctcagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactcc
aacttcctggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttac
agaaacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcc
ctactgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatc
ctgtacactgatttggaggtgaaatccctcttgttggaagcgtatgtcaaagggcagcag
gagctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtg
attttccgaccccagaatccctggacgatggccatcatgaatgttctggcagagctgcat
acggagcatgatctcaagctgaacttgaagtttgagattgaggtgctgtgtaagaactta
tcattggacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaag
agcctggaggaacagctctctgcaccaaagaaagaggccaagccccctgaagaaatgctc
cctgttgttagcacaggtatccagcactttcaaattgggatgccccttgtcggagacttt
cttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggg
ccccctaccccacagtttagctatcatgacatcaatgtgtatgcccttgcagggctagcc
cctcacatcaatatcaacatcaacatccccttgctccaagcccaccctcagctgaagcag
tgtgtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggaccgt
tccatcaagatcgccatgactacctgcgagcaaattgtcaggaaggactttgccctggac
tccgaggagtcgcgcatgcgtgtggccgcccatcacatgatgcgtaacctgaccgccggc
atggccatgatcacctgccgggagcccctgctcatgagcatcgctaccaacctgaagaac
agctttgcagcagccctcagggcccccaccccccagcagagagagatgatggaggaggct
gctgccagggttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcg
gtggagaaggctggcccagagatggacaagagactggccacggagtttgagctgaggaag
cacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagag
cgcatgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcagtg
tacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagccc
actggattccttgcccagcccatgaagcaacaggcatgggccacagacgacgtggctcag
atctatgacaagtgcatggcggacctggagcagcacctccatgccatccccccagcgctg
gccatgaacccccagactcaggccctgcgcagtctgttggaggcagtggccctggccagg
aactcccgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctgctc
gatgccaccagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctgctg
gtgctcaaagccctccaggacggccgggcatacggaccacaatggtgcaacaaacagatt
accaggtgcctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctg
ctgatcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatg
gagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctg
gtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagact
ctgatgagaaccagcgcacactctagggccaatgcacccgaggggcttcctcagctgatg
gatgtagtccgctctaactatgaggccatgatcgatcgggcccatggaggacccaacttt
atgatgcactctggcatctcccaagcatctgagtacgacgacccgccgggcctgagggag
aaggcagagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggccgg
gacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaag
actgatgacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagc
taccgcgcccaggctgagcagcagcacaatcctgcggctagcgccgccatcatcagagcc
aagtgctaccacaacctggacgcctttgttcgcctcatcgctctgctggtcaagcactct
ggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtg
gttggtgtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttac
caccgcatcttcatcatgctgctgctcgagctcaatgcccccgagcatgtgctggagacc
atcaacttccagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaa
gcccctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgccagg
atgctggcacacaccccacagcagaagggttggcccatgtatgcccagctgctcattgat
cttttcaaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatc
ctctacaagggtaccctgcgtgttctgcttgtcctgctgcatgacttcccagagttcctg
tgtgactaccactacggcttctgtgacgtcatcccgcccaactgcatccagctccgcaac
ctgatcctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaatctg
aaggttgacatgctcagcgagatcaacattgctccgcgcatcctcactaacttcaccgga
gtgatgccctctcagttcaagaaggatctggactcgtacctgaagacgcgctcccccgtc
accttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctgg
aagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgt
tacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacac
atccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatggac
attttccagaacctggctgtggacctggacactgaggggcgctatctcttcctgaatgcg
attgctaatcagctgcgctacccaaacagccacacccattacttcagctgcaccatgctc
tacctgtttgctgaggccaacacagaggcaatccaggagcagatcaccagggttcttctg
gagaggctgattgtgaacaggcctcacccctggggactgctcatcacgttcatcgagctc
atcaagaaccctgccttcaagttctggagccacgactttgtgcactgtgccccggagatc
gaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtg
atggagggcactggtgccagttag
DBGET
integrated database retrieval system
