Salmo trutta (river trout): 115203816
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Entry
115203816 CDS
T08542
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
stru
Salmo trutta (river trout)
Pathway
stru03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
stru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115203816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stru03019
]
115203816
03009 Ribosome biogenesis [BR:
stru03009
]
115203816
Messenger RNA biogenesis [BR:
stru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115203816
Ribosome biogenesis [BR:
stru03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
115203816
Pre-60S particles
115203816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Arm
Cnd1
Vac14_Fab1_bd
IBN_N
TPR_IPO5
TOR1L1_N
HEAT_EF3_N
HEAT_MROH2B_C
PDS5
TPR_DNAAF5
Adaptin_N
HEAT_GCN1_C
MMS19_C
CEP104-like_TOG
Ltn1_1st
UNC45-central
TPR_TTI1_C
Dopey_N
INTS7_N
VPS15-like_hel
RTP1_C1
ARM_TBCD
Motif
Other DBs
NCBI-GeneID:
115203816
NCBI-ProteinID:
XP_029624696
Ensembl:
ENSSTUG00000019248
LinkDB
All DBs
Position
12:55129841..55190860
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AA seq
893 aa
AA seq
DB search
MECEWKPDDQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNHYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEVLDSDMLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDGFIENLFALATDEEPEVRKNVCRALV
MLLEVRMDRLLPHMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKDVLCNHLSKL
TPVLVNGMKYSEIDIILLKGDVEEDDEAIPDNEQDIRPRFHRSRTVAQQHEGDRDGIEED
DDEDDDLEDDDTISDWNLRKCSAAALDVLANVFRDDLLLPILPLLKELLFHPEWVIKESG
ILVLGAIAEGCMQGMITYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY
LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN
LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIAKWNQLKDEDKDLFPLLECLSSVATAL
QSGFLPYCEPVYQRCVNLVQKTLAQTMLHQSQPDQYEAPDKDFMIVALDLLSGLAEGLGG
NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFLHVKPCIADFMPILGTNL
NPELISVCNNATWAIGEISIQMGAEMQPYVGMVLHQLVEIINRPNTPKTLLENTAITIGR
LGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCD
AVASWVNPKDDLRDMFGKIFHGFKNQVGEENWGRFSGQFPLPLKERLAAFYGV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcgagtggaaaccagacgaccaaggacttcagcaaattctacagcttttgaaa
gagtcccagtctcccgatacgtccactcaaagatccgtccagcaaagactggaacagctc
aaccattacccagacttcaacaactacttgatattcgtgctcacaaagttgaaatcggaa
gatgagccgacccggtctctgagtggtctgatcctgaagaacaatgtgaaggcccactac
cagaacttccccaatggagtgtctgacttcatcaagagcgagtgtctgcagaacatcgga
gactcctcacccctcatacgggccactgtgggtatcctcatcactaccatcgcctccaaa
ggggagctgcagaactggcctgagctgctgcccaaactctgccttctgctggactctgag
gactacaacacctgtgagggggcgtttggagctcttcagaaaatctgtgaggactccgca
gaggtcttggacagtgacatgttggaccgtccgctcaatgtcatgatcccaaagttcctg
cagttcttcaagcacagcagccccaagatcaggtctcatgccatcgcctgcgtcaaccag
ttcatcataagtaggacccaggccctcatgctgcacatcgatggcttcattgagaacctg
tttgccctggcgactgatgaagaaccggaggtgaggaagaacgtgtgcagagctctggtc
atgctgctggaggtccgcatggaccgtctcctaccacacatgcacaacatcatagagtac
atgctgcagaggactcaggaccaggatgagaatgtggctctggaggcctgtgagttctgg
ctgaccctggctgaacagcctgtatgtaaggacgttctgtgtaaccacctctccaagctg
actccggtgctcgtcaacgggatgaagtattcggagatcgacatcattctgctcaagggt
gacgtggaggaagatgatgaggccatccctgacaacgagcaggacatcaggcccaggttc
caccgctcccgtacggttgcccagcaacacgagggtgaccgggacggcattgaggaagac
gatgatgaagacgatgacctggaagatgatgacaccatctctgactggaacctccgtaag
tgttcagcagcggcgttagatgtgttggctaacgtgttcagagacgacctgctcctccct
atcctgcctctcctcaaagagctcctcttccacccagagtgggtcatcaaggagtctgga
atacttgttctgggggccatcgctgagggttgtatgcagggtatgattacctacctgcca
gagctcatcccccacctggtgcagtgtctgagtgataagaaggccctggtgcgctccatc
acctgctggaccctgagtcgctatgcccactgggtggtcagccagccacctgacacctac
ctgaagcccctgatgactgagctgctcaaacgcatcctggactccaacaagagggtgcag
gaggccgcctgcagtgcctttgccactctagaagaggaggcgtgtacagagttggttccc
tacctggcctatattctggacactctggtgtttgccttcagcaagtaccaacacaagaac
ctgctcatactgtacgacgctatagggacgctcgctgactctgtgggacaccacctcaac
aagccggagtacattcagatgctgatgcctccactgatagcaaaatggaaccagttgaaa
gatgaagacaaggatctgttccctttactagagtgcctgtcgtcagtagccacggctctc
cagagtggtttcctgccctactgtgagcctgtgtaccagcgctgtgttaacctggtgcag
aagaccctcgctcagactatgctccaccagtcccagccagaccagtacgaggcccctgat
aaggactttatgattgtggccctggacctgctcagtggattggctgaagggttgggcggc
aacatcgagcagctggtcgcacgtagcaacatcctcacgctcatgtaccagtgcatgcag
gacaaaatgcccgaggtgcgtcagagctcctttgctctgctgggtgacctgacgaaggct
tgtttcctgcacgtaaagccgtgcattgctgatttcatgccaatattgggcactaatctg
aacccagaattgatatcggtgtgcaacaatgcaacatgggcaatcggagagatatctata
caaatgggtgctgagatgcaaccatacgtgggcatggtgctgcaccagctggttgagatc
atcaacaggcccaacaccccaaagaccctgctggagaacacagcaataacaattggtcgt
cttggttacgtttgtcctcaagaggtggcaccgatgctacagcagtttataagaccctgg
tgtacctctttacgtaacataagagacaatgaggagaaagactcagcattcagaggcatc
tgcactatgatcagtgtcaacccaggaggagttgtgcaggattttatatttttctgtgat
gcagtggcctcatgggtaaatccaaaggatgatctgcgtgacatgtttggcaagatcttc
catgggtttaagaaccaggtgggcgaggagaactgggggcgtttctcaggccagttccct
ctgcctctgaaggaacgactggccgccttctacggggtgtaa
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