Streptococcus sp. VT 162: V470_08670
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Entry
V470_08670 CDS
T03287
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stv
Streptococcus sp. VT 162
Pathway
stv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V470_08670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stv03021
]
V470_08670
03400 DNA repair and recombination proteins [BR:
stv03400
]
V470_08670
Enzymes [BR:
stv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V470_08670
Transcription machinery [BR:
stv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V470_08670
DNA repair and recombination proteins [BR:
stv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V470_08670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
AHZ48482
LinkDB
All DBs
Position
complement(1752882..1756493)
Genome browser
AA seq
1203 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELESDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPMDSRTDEALKE
IYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAEPLV
DPETGEILVEAGTVMTRSVIESIEHHLDGDLNKIVYIPNDAAVLTEPVLLQKFKVVAPTD
PDRVVTIIGNANPDDKVRVVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGRH
QGVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
YVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAY
NQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWDTVKEAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDQEVELRDLDEGMDEDVIHVDDLEKAREKAAQEAKAAFEAEEAEKATKAEATEEAA
EQE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaaacatcgtacccgtcgtagtttttcaagaatc
aaagaagttcttgacttaccaaatttgattgaaattcaaacggattcattcaaagatttc
ctagatcacggtcttaaggaagtatttgaagatgtattgccaatttcaaacttcacagac
acaatggagttggaatttgttggctatgaaatcaaggaaccaaaatacacgctcgaagaa
gctcgtatccacgatgctagctactcagcaccaatttttgtaaccttccgcttgatcaat
aaagaaacaggcgaaatcaagacccaagaagtcttctttggtgatttcccaatcatgacc
gaaatgggtactttcatcatcaatggtggtgaacgtattatcgtttctcagttggtccgc
tcaccaggtgtttactttaatgacaaagtagacaagaacggtaaagtgggctacggttct
actgttatccctaaccgtggagcttggttggaacttgaaagcgactcaaaagacatcgct
tatactcgtatcgaccgtactcgtaagattccatttacgaccttggttcgtgcacttggt
ttctcaggtgatgatgaaatctttgatatctttggtgatagcgaattggttcgcaacact
attgaaaaagatatccacaagaatccaatggactctcgtacagacgaagccttgaaagaa
atctacgaacgccttcgtccaggtgagcctaagactgctgaaagctcacgtagcttgctt
gtagcacgtttctttgacccacgccgctacgatttggcagctgttggtcgttacaagatc
aataaaaaactcaacgttaaaacacgcttgctcaaccaaaccattgcggagccattggta
gaccctgaaactggtgaaatcttggtagaagctggtaccgtcatgactcgtagcgtgatc
gagagtatcgagcaccacttggatggcgacttgaacaagatcgtttatattccaaacgat
gcagctgttttgacagaaccagttctccttcaaaaattcaaggttgttgccccaacggat
ccagaccgtgttgtaaccatcatcggaaatgccaatccagacgacaaggttcgtgttgta
actcctgcagatatccttgctgaaatgagctacttcctcaacttggcggaaggtatcggc
cgtgtggatgatatcgaccaccttggaaaccgtcgtatccgtgcagttggtgaattgctt
gccaatcaagtacgtcttggactttctcgtatggaacgtaatgtccgtgaacgtatgtct
gttcaggacaatgaagttttaacaccacaacaaatcatcaatatccgtcctgtaacagct
gcggttaaagaattctttggttcatcacagttgtcacagttcatggaccaacacaacccg
ctttctgagttgtctcacaaacgccgtttgtcagccttgggacctggtggtttgactcgt
gaccgtgctggatatgaagttcgtgacgtgcactacactcactacggtcgtatgtgccca
atcgagacacctgaaggacctaacatcggtttgatcaataacttgtcatcttacggacac
ttgaataagtatggatttgttcaaacaccataccgtaaggttgaccgtgaaacaggtgtt
gttacgaatgaaatcgtttggttgacagccgatgaagaagatgaattcactgtagcgcag
gccaactctcgtcttaacgaagatggaacctttgctgaaaaagttgtcatgggacgtcac
caaggggtcaaccaagagtatccagcagaagtggttgactacatggacgtgtcaccaaaa
caggtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaggccgtgccattgattgatccaaaagcacct
tacgttggtactggtatggaataccaagcagctcatgactctggtgctgctgttattgcc
cagtatgatggtaaagttacatacgcagatgctgacaaggtagaagtacgccgcgaagat
ggttcattggacgtttaccacatccaaaaattccgtcgttcaaactcaggtactgcttac
aaccaacgcacgcttgttaaagttggcgatgtcgttgaaaaaggcgactttatcgctgac
ggaccttctatggaaaaaggggaaatggcgcttggacaaaacccaatcgttgcctatatg
acttgggaaggttacaacttcgaggatgccgttatcatgagtgaacgcttggtcaaagac
gatgtctacacatctgtccacctcgaagaatacgaatcagaaacgcgcgatacaaagctt
gggcctgaagaaattactcgtgaaattccaaacgttggggaagatgctcttaaagacctt
gacgaaatgggtattatccgtatcggtgctgaggttaaagaaggggatatccttgtaggt
aaagtcacacctaagggtgaaaaagacctttcagctgaagaacgtctcttgcacgctatc
ttcggagacaagtctcgtgaagttcgtgacacttctcttcgtgtacctcacggtgccgat
ggtgtcgttcgtgatgttaaaatctttacacgtgcaaatggtgatgagttgcaatcaggt
gttaacatgctggttcgcgtctacatcgctcaaaaacgtaagatcaaggtcggagataag
atggccggacgtcacggaaacaaaggggttgtctctcgtatcgttcctgtagaagacatg
ccttaccttccagacggaactccagtcgatatcatgttgaacccacttggggtgccatca
cgtatgaatatcggtcaggttatggaactccaccttggtatggcagcccgtactcttggt
atccacattgcaacaccagtctttgacggagcaagttctgaagacctttgggacactgtt
aaagaagcaggtatggacagcgatgctaagacaatcctttacgacggacgtacaggtgag
ccgtttgacaaccgtgtatcagttggtgtcatgtacatgatcaaactccaccacatggtt
gatgataaattgcacgcgcgttcagtcggaccatactcaaccgttacccaacaaccactc
ggaggtaaagctcagtttggtggacaacgtttcggtgagatggaggtttgggctcttgaa
gcctacggtgcgtcaaatgtccttcaagaaatcttgacatacaagtctgacgatatcaac
ggacgtttgaaagcttatgaagccattacaaaaggaaaaccaattccaaaaccaggtgtt
ccagaatccttccgagttcttgtcaaagaattgcaatctcttggtcttgacatgcgtgtc
cttgacgaagatgaccaagaagtggaacttcgcgacttggatgaaggaatggacgaagat
gtcatccacgtagatgaccttgaaaaagcccgcgaaaaagcagcccaagaggctaaagca
gcctttgaagctgaagaagctgagaaagcaacaaaagcggaagcaacagaagaagctgct
gaacaagaataa
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