Subtercola sp. PAMC28395: KPL76_01100
Help
Entry
KPL76_01100 CDS
T07261
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
subt
Subtercola sp. PAMC28395
Pathway
subt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
subt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KPL76_01100 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
subt03021
]
KPL76_01100 (rpoB)
03400 DNA repair and recombination proteins [BR:
subt03400
]
KPL76_01100 (rpoB)
Enzymes [BR:
subt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KPL76_01100 (rpoB)
Transcription machinery [BR:
subt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KPL76_01100 (rpoB)
DNA repair and recombination proteins [BR:
subt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KPL76_01100 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QWT24071
LinkDB
All DBs
Position
complement(220668..224159)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAASNATTTTPKNGRGASRLSFAKISDNLTVPDLLALQTESFDWLVGNDAWKTRVAEAK
KQGRKDLPEHSGLDEIFEEISPIEDLGETMQLSFTSPFLEPEKYTIDECKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFDRQLEK
TSDKDIYSARIIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEQFK
GYSSIEATLEKDSILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINRKLGLESELSNSVLTNEDIIATIKYLVALHENQVTLPGVRAGKKVDIRLDIDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRRVVDGVVTENIDYLTASEEDEYVVAQANAPLTKEA
RFAEPRVLARQKGGEVDLFPIEVIGYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLMSDSPYVGTGMEGFAAIDAGDVVTASHSGVVQEVSAEVVTVALDEGGTETYYL
RKFDRSNQGTSYNQRVIVNEGDRIEAGEVIADGPATENGELALGKNLLVAFMPWEGYNFE
DAMILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGERGTIIAVKE
FSADNDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVIAKILPVEDMPFLADGTP
VDVVLNPLGIPGRMNFGQVLEIHLGWIAKQGWKVEGKGNKWAGRLPEAAHEAPANTKVAT
PVFDGALEEEIAGLLDSTLPTRDGDRLIDGTGKATLFDGRSGEPFPNPISVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEV
FRAAEELGINISTRFENSSIDDI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgagcaacgcaaccaccaccacacccaagaacggtcgcggagcatcgcga
ctctcgttcgccaaaatttctgacaacctgacggttcccgatctgcttgcactgcagacc
gagagcttcgactggcttgtcggcaacgacgcgtggaagacgcgtgttgccgaagccaag
aagcagggtcgcaaagacctgccagagcactccggtcttgacgagatcttcgaggagatc
tctccgatcgaagacctcggcgagaccatgcagctcagcttcacgagcccgttcctcgag
cccgagaagtacaccatcgacgagtgtaaagagcgtggcaagacctacgccgctccgctg
tacgtcgaggccgagttcatgaaccacctcaccggtgagatcaagacccagaccgtcttc
atgggagacttccccctgatgaccgagaagggcacgttcatcatcaacggcaccgagcgt
gtcgtcgtgtcgcagctcgtccgcagccccggcgtctacttcgaccgccagctcgagaag
acttctgacaaagacatctactctgctcgcatcattccgagccgcggtgcctggctcgag
ttcgagatcgacaagcgcgaccaggtcggcgttcgcatcgaccgcaagcgcaagcagagc
gtcaccgtcttcctgaaggccctgggcctcacgagcgaagagatcctcgagcagttcaag
ggctactccagcatcgaagcgactctggagaaggattccatcctcaccaaagaagaggcg
ctcaaagacatctaccgcaagctccgcccgggcgagcaggttgctgccgaagctgcgcgt
gcgctgctcgacaacttctacttcaactccaagcgctacgacctcgcgaaggtcggtcgc
tacaagatcaaccgcaagctgggcctcgagagcgagctgtcgaactccgttctgacgaac
gaagacatcatcgcgacgatcaagtacctcgtggccctccacgagaaccaggtcactctc
cccggcgtgcgcgcaggcaagaaggtcgacatccgtctcgacatcgacgacatcgaccac
ttcggcaaccgtcgtatccgtgccgtgggtgagctcatccagaaccaggtccgcacgggg
ctctcccgtatggagcgcgttgttcgcgagcgcatgacgacccaggacatcgaagcgatc
accccgcagaccctgatcaacgtgcgccccgtcgtcgcagcgatcaaggagttcttcggt
acctcgcagctgagccagttcatggaccagaacaaccccctcgcgggcctgacgcacaag
cgtcgcctttccgcgctgggcccgggtggtctgtcacgtgagcgcgccggcgtcgaggtt
cgagacgtgcaccccagccactacggccgcatgtgccccatcgaaacccctgaaggcccg
aacatcggcctgatcggctcgctggcgtcgttcgcccgtatcaactccttcggcttcatc
gagaccccgtaccgtcgcgtcgtcgacggcgtggtcaccgagaacatcgattacctcacg
gccagcgaagaagacgagtacgtcgtcgcccaggccaacgcccctctgacgaaagaggcc
cggtttgccgagcctcgcgttctcgcccgccagaagggtggagaggtcgacctcttcccg
atcgaggtcatcggctacatggatgtctcgccgcgccagatggtctccgtcgcgacaagc
ctcattccgttcctcgagcacgacgatgcaaaccgcgcgctcatgggtgcgaacatgcag
cgccaggctgttccgctcctcatgagcgacagcccctacgtgggtaccggtatggagggc
ttcgcagccatcgacgccggcgacgtcgtcacggcgtcacactccggtgtcgtgcaggag
gtgtcggccgaggtcgtcaccgtcgcgctcgacgagggtggcaccgagacgtactacctg
cgcaagttcgaccgctcgaaccagggcacgagctacaaccagcgtgtcatcgtcaacgag
ggcgaccgcatcgaggccggagaggtcatcgccgatggccccgccaccgagaacggcgaa
ctcgcactcggcaagaacctgctcgtggcattcatgccatgggagggctacaacttcgaa
gacgcgatgatcctgagccagaacctggtgaaggacgacactctgtcgagcatccacatc
gaagagtacgaagtggatgcccgtgacacgaagctcggcaaggaggagatcacccgtgac
ctccccaacgtcagccccgagttgcttgccgacctcgacgagcgaggcatcatccgcatc
ggtgccgaggtccgccccggtgacatcctcgtcggaaaggtcacccccaagggcgagacc
gagctctctgccgaggagcgcctgctccgtgcgatcttcaacgagaagagccgcgaagtc
cgcgacacgtcgttgaaggttccccacggtgagcgcggcaccatcatcgctgtcaaggag
ttctccgctgacaacgacgatgaactgggttcaggcgtcaaccagcgcgtcgtggtctac
atcgcccagaagcgcaagatcaccgagggtgacaagctcgccggccgtcacggcaacaag
ggtgtcatcgcgaagatcctccccgtcgaagacatgccgttcctcgcagacggcactcct
gtcgacgtggtgctcaacccactcggtatcccgggccgcatgaacttcggccaggttctc
gagatccacttgggctggattgccaagcagggctggaaggtcgaaggcaagggcaacaag
tgggccggccgtcttcccgaggcagcgcacgaggccccggccaacacgaaggtcgcgacc
cccgtgttcgacggagccctcgaagaggagatcgcaggtctgctcgactcgaccctgccg
acccgtgatggcgaccgcctgatcgacggcaccggcaaggcgactctcttcgatggccgc
tcaggtgagccgttcccgaacccgatctctgtcggctacatgtacatcctgaagctgcac
cacctcgtcgacgacaagatccacgctcgctcgaccggtccgtactccatgatcacgcag
cagccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaagtgtgg
gcgcttgaggcctacggcgccgcctacgcactgcaggagcttctgacgatcaagtcagac
gacatcctcggccgcgtgaaggtgtatgaagccatcgtcaagggtgagaacatccaggag
cccggtattcccgagagcttcaaggtgctcatcaaggagatgcagtcgctctgcctcaac
gtcgaagtcctttcggcagacggcaccgcagtcagcctgcgcgacaccgatgatgaggtc
ttccgcgctgcagaagagctcggcatcaacatctccacgcgcttcgagaactcgtccatc
gacgacatttga
DBGET
integrated database retrieval system
