Sulfurimonas xiamenensis: FJR47_01425
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Entry
FJR47_01425 CDS
T06240
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
suln
Sulfurimonas xiamenensis
Pathway
suln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
suln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJR47_01425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suln03021
]
FJR47_01425 (rpoB)
03400 DNA repair and recombination proteins [BR:
suln03400
]
FJR47_01425 (rpoB)
Enzymes [BR:
suln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJR47_01425 (rpoB)
Transcription machinery [BR:
suln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJR47_01425 (rpoB)
DNA repair and recombination proteins [BR:
suln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJR47_01425 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QFR42644
UniProt:
A0A5P8NKY5
LinkDB
All DBs
Position
244078..248223
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNTLYSGNRLRVDFSKTPQQIEVPNLLQLQQSSYNKFLMLDEKDRAQSGVETVFQSVFP
IHDAQNRLTVEYIGSEVGKPKYTVRECMERGLTYAVSLRMKTRLVLWDRDENTKEKLGVK
DIKEQSIFVRDIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESTTSGNKLIYTGQI
IPDRGSWLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQQINIVDNK
YLMKFNPNDYSSRLTYDLIDKEGNVILASGKRLSSKKAQKFLEDGIKEVEYPLEVLLDRY
LAKPIIDPETGEILFDTMTHIDEVKLKKMVEVGVTNFSIANDLAEGVDSSIINAFNADSD
SLKLLKQTEDIEDENDLAAIRIYKVMRPGEPVTKDAAKVFVNQLFFDPERYDLTKVGRMK
MNHKLSLNIPEYITVLTHEDIIESVKYVIKVKNGQGHIDDRDHLGNRRIRSIGELLGNEL
HNGLIKMQKAIRDKLSTMSGPMNELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYAKVN
EHGFIEAPYKVMKDGKILNEVVYLTATQEEGKRIAAASNKLDENGQFIDKLVVTRMDGEI
LHRPVSECEYADLSSHMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPMVGT
GVEKLVARDSWECVKAKRSGVVEKVDGKHIYVMGEDDGEIYIDYYPLQKNLRTNQNTSFA
QKPIVKLGQRVEKGQIIADGPNMDQGELALGINAMVAFMPWNGYNFEDAIVISERLIRKD
AFTSVHIYEKEAEARELKHGVEEITRDIPNVRDDELAHLDESGIVKIGTTVRGGMILVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVTNKSLYCPPSMEGVVVDVKIFTKKGYDKDARAL
ELEKEERDYLEREHYDRLLMIDKEEMLRVTKLLTKEPLIADIKIGDTEYKAGDIIDGKDL
VEVNRFAMNAIVKSFSEEIQAEYNKTKNYFQKEKRLFRDEHEEKLNILEKDDILPNGVVK
YVKVYIATKRQLKVGDKMAGRHGNKGIVSTIVPEVDMPYMEDGRSVDVCLNPLGVPSRMN
IGQILEMHLGMAGRELGNQILEEFNSKQKDFIQNIRAKMIEISDVAGMMNAKEVVAKMSD
DELLHYARDWSKGVKFASPIFEGVNSEEFEKLFALAKMDTDGKTVLYNGKTGEKIKERVN
VGYMYMLKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGASAV
LKEMLTIKSDDVDGRVRAYKAITKGELVPESGIPETLFVLTKELQSLALDVEIFDEVEDD
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacactttatattccggaaaccgtcttcgtgtagacttctctaaaactcctcaa
cagatagaagtaccaaacttactgcaactgcaacaaagttcatacaacaaatttttgatg
cttgatgaaaaagatagagcgcaaagcggtgttgaaacagtattccaatcagtttttcct
attcatgacgctcaaaacagacttacagttgagtatatcggcagtgaagtaggcaagcct
aaatacacagttagagagtgtatggagcgtggtcttacttatgcagttagcctaagaatg
aaaactcgtcttgttctttgggacagagatgaaaatactaaagagaagttaggagttaaa
gatattaaagagcagagtatatttgttcgtgatatcccgcttatgactgagagaacttct
tttattatcaatggtgttgagagagttgttgttaatcagcttcaccgctcaccgggtgta
atctttaaagaagaggagtcaacaacttctggcaataagcttatctatacaggtcagatt
atacctgatcgcggttcatggttatattttgagtatgaccctaaagatattctttatatg
agaattaataagcgccgtaaagttcctgtaactattatgtttagagcacttggttattct
aaacaagatattttaaaactattttatcctattcagcaaatcaatatagttgacaataaa
tatttaatgaaatttaatccaaacgattactcatcaagactgacatatgatttgattgat
aaagagggaaatgttattttagcgtctggaaaaagactctccagcaaaaaagcacaaaaa
tttcttgaagatggtattaaagaagttgaatatcctcttgaagtgttgttagaccgctat
ttggcaaagcctattattgatcctgaaacgggtgaaattctttttgacactatgactcat
attgatgaagtaaaacttaaaaaaatggttgaagtcggtgtaacaaactttagtatcgca
aatgatttggctgagggtgtggatagctcgattatcaatgcatttaatgctgattcagac
tcactaaaattattaaagcagacagaagatatcgaagatgaaaatgatttggcggcaatt
cgtatttataaagttatgagaccgggtgagcctgtaacaaaagatgctgcaaaagtattt
gtaaatcaactcttttttgatcctgaaagatatgatttgacaaaagtcggtcgtatgaag
atgaatcataaattaagtcttaatatacctgaatatataactgttttaacgcatgaagat
attatcgaatctgtaaaatatgttattaaagttaaaaatggtcaaggtcatattgatgat
agagatcacttaggtaatcgtcgtatccgttctatcggtgagcttttaggaaatgagtta
cataacggtcttatcaagatgcaaaaagcgattcgtgacaaactctcaactatgagtgga
ccgatgaatgagcttatgcctcacgatttaataaactcaaagatgattacttcaactatt
atggaattcttctcgggcggtcaattgtctcaatttatggatcaaacaaatccactttca
gaagtaacgcataagcgtcgtctatctgctcttggtgagggcggtttagtaaaagagcgt
gctggctttgaggtgcgtgatgttcacccgactcactatggaagaatctgtcctattgag
acaccggagggacaaaatattggtcttatcaatactcttgcaacatatgctaaagtaaat
gagcatggatttattgaagctccgtataaagtaatgaaagatgggaaaattcttaatgag
gttgtttatcttaccgcaacacaggaagagggcaaaagaatagcggctgcatctaacaaa
ctggacgaaaacggtcaatttatagataaattggttgttacaagaatggatggagagatt
cttcaccgccctgtatccgagtgtgaatatgccgacttatcatctcatatggttgttggt
gttgcagcttccctgattcctttcttggaacatgacgatgcaaaccgtgcgcttatgggt
tcaaacatgcaacgacaagcagtacctcttttaaaacctgacgctcctatggtgggaact
ggtgttgaaaagcttgttgctcgtgactcttgggagtgtgtaaaagcaaaacgctcaggt
gttgtagagaaagttgatggtaaacatatctatgttatgggagaagatgatggggagata
tatatagattattatcctttacaaaaaaatcttcgtacaaaccaaaacacttcatttgct
caaaagccaattgtaaaactgggtcaaagagtagaaaagggtcagataattgccgacggt
ccaaatatggatcagggtgaattggcactaggtattaatgcaatggttgcttttatgcct
tggaatggctataactttgaggatgctattgtaatatcagagagattaatccgtaaagat
gcatttacatctgttcatatttatgaaaaagaggctgaagcaagagagttaaagcatggc
gttgaagagattactcgtgatattccaaatgtaagagatgatgagcttgctcatttagat
gagagcggtattgtaaaaataggtacaactgtcagaggcggaatgattcttgttggtaaa
gtgtctccaaaaggtgaagttaaaccgactcctgaagagagacttcttcgtgctattttt
ggtgaaaaagctggacatgtaacaaataaatctctttattgtcctccaagtatggaaggt
gttgttgttgatgtaaagatttttacaaaaaaaggttatgacaaagatgcgcgtgcactc
gaacttgaaaaagaggagcgtgattatttggagcgtgaacactacgacagacttcttatg
atagataaagaggagatgttgagagttacaaaacttcttacaaaagagcctcttatagct
gatattaaaatcggtgatacagagtataaagccggagatataatcgatggtaaagacttg
gttgaagtaaaccgttttgctatgaatgcgattgtaaaatcatttagtgaagagattcaa
gcagaatacaataaaacgaaaaactatttccaaaaagagaagagactcttccgcgatgag
catgaagagaaattaaatatcttagaaaaagatgatattctgccaaacggtgtagtgaag
tatgtaaaagtatacatcgctacaaaacgccagctgaaagtcggtgataaaatggcggga
cgccacggaaacaagggtattgtttctactatagttcctgaagttgatatgccgtacatg
gaagatggaagaagcgttgatgtttgtcttaatccacttggtgttccttctcgtatgaat
atcggacagatattagagatgcacttaggtatggcaggtcgtgaacttggaaatcaaatc
ttagaagagtttaactctaaacaaaaagattttattcaaaatattcgcgcaaaaatgatt
gagatatcagatgttgcaggtatgatgaatgcaaaagaagttgttgcaaaaatgagtgac
gatgaacttcttcactatgctcgtgactggtcaaaaggtgttaaatttgcatctcctata
tttgaaggtgtaaattctgaagagtttgaaaagttgtttgctcttgcaaagatggataca
gatggtaaaactgttctttataacggcaagacaggcgagaagattaaagagcgtgtaaat
gtgggttatatgtatatgcttaaacttcatcaccttgttgatgagaagattcatgctcgt
tcaactggaccatactcacttgtaacacaacagccagtcggcggtaaagcgctatttgga
gggcagagatttggtgagatggaagtttgggcacttgaagcgtatggtgcaagtgctgtt
cttaaagagatgttaactatcaaatctgatgatgttgatggaagagttcgtgcgtataaa
gcaattacaaaaggtgaattggtgccagaatccggtattccagagacactctttgtatta
actaaagagctgcaatcattagctcttgatgtagaaatatttgacgaggtagaagacgat
gagtaa
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