Sulfolobus sp. E11-6: GFS33_13330
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Entry
GFS33_13330 CDS
T07647
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
sulo
Sulfolobus sp. E11-6
Pathway
sulo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFS33_13330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulo03019
]
GFS33_13330
Messenger RNA biogenesis [BR:
sulo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GFS33_13330
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
GFS33_13330
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
Motif
Other DBs
NCBI-ProteinID:
QGA69533
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Position
2485933..2486760
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AA seq
275 aa
AA seq
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MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLMDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTRLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYRVEQDSNGF
RVNKNEITGKLPLNYPVVTVSIAKVDKYLIVDPDLDEESIMDAKISFSYTPDLRIVGIQK
SGKGSMSLQDIDQAENTARLAAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctactccatcaaatcaaaatattatacctataattaagaaggaaagtatagta
agtctttttgaaaaaggtattaggcaagatggaagaaaattaatggattatagacctctt
tcaataaccttggattacgcaaagaaggctgatggttctgcgttagtaaagttaggcacg
acaatggtattggcagggacaaaacttgaaatagataagccttatgaagacactcctaat
caaggaaacctcattgtcaatgttgaactcttacctttagcgtatgaaacctttgaacct
ggacctccggatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagcattagatctaactagacttgtaatagaacctggtaaaagtgtatggacagta
tggcttgatgtttacgtattagactacggcgggaatgtattggacgcatgtacgttggcc
tcagttgcagcattatataatactaaagtgtatagggtggagcaagattctaacggattt
agagtcaataaaaatgaaattactggtaaattaccattgaattatccagtagttacagta
tctatagcaaaagttgataaatatttaatagttgatccagatttggatgaagagtcaata
atggacgctaagatttcattttcttacactccagatctaagaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaagctgagaatacagcaagatta
gcggctgttaagcttttagaagaacttaaaaagcagttaggaatttaa
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