Sulfurospirillum diekertiae ACSTCE: FA592_01175
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Entry
FA592_01175 CDS
T06548
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sult
Sulfurospirillum diekertiae ACSTCE
Pathway
sult03030
DNA replication
sult03410
Base excision repair
sult03420
Nucleotide excision repair
sult03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sult00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FA592_01175 (ligA)
03410 Base excision repair
FA592_01175 (ligA)
03420 Nucleotide excision repair
FA592_01175 (ligA)
03430 Mismatch repair
FA592_01175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sult03032
]
FA592_01175 (ligA)
03400 DNA repair and recombination proteins [BR:
sult03400
]
FA592_01175 (ligA)
Enzymes [BR:
sult01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FA592_01175 (ligA)
DNA replication proteins [BR:
sult03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FA592_01175 (ligA)
DNA repair and recombination proteins [BR:
sult03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FA592_01175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FA592_01175 (ligA)
MMR (mismatch excision repair)
DNA ligase
FA592_01175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FA592_01175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
Glyco_trans_1_4
Motif
Other DBs
NCBI-ProteinID:
QIR77569
UniProt:
A0A6G9VNI8
LinkDB
All DBs
Position
complement(1497639..1499585)
Genome browser
AA seq
648 aa
AA seq
DB search
MSHEEYLAKIELANAWAKAYYVDDAPLASDEEYDTLYHEILKYEQENPLFTDVNSPTKRV
GGMVLEGFNKAEHKARMWSMEDVFDEADLDAWIERVKKVKESFTFYCEPKFDGASLNLIY
ENGVLKQAITRGDGSIGEDVTENVKTIGSIPLRIDYLEPIEIRGEVVIKKADFERLNQER
LSLGEALFANPRNAAAGSLRQLDTSITAKRKLMFYPWGIGINSLTQSFLSQKMNFVYSLG
FLKPPRIVVTQSVDDVHALYAELIAKRDEIEMMMDGMVVKIDDVSLQEELGYTVKYPKWM
VAFKFPAIEKVTRLKDITLQVGRTGVVTPVAEVEAVNIEGVIVERATLHNFDEIERKDVR
IGDSVIIIRSGDVIPKIIKVLIERRNGSEKVVERPLTCPVCGSELLDDGALIKCQNLSCV
ARVVGAMIHFASKKALNIDGLGDKIIEQLYAQKLVLHVKDLYTLTVEQLLALEGFKAKKA
DNLLAAIEQSKGVSLEKFINALGIEHIGEVAAKKIARAFGLEWLEASYEQIIALEGFGEE
MAKSLVEFIHVNRTETNELMAVIQPVASKLEITESAFTGKTVVLTGSMSKPRDEIKVMLE
KLGAKVSGSVSKKTDFVIYGEDAGSKLSKAEELGVKTLSESELNGMVE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgaagagtatttagccaaaattgagcttgccaatgcttgggcaaaggcgtat
tacgttgatgatgcacctttggctagtgatgaagagtacgacacactctatcatgaaatt
ttaaaatatgagcaagaaaatccactttttacagatgtcaatagtcctactaaacgagta
ggcggcatggtattggaaggatttaataaagcagaacataaagcgcgcatgtggagcatg
gaagatgtctttgatgaagctgatttggatgcatggatagagcgtgttaaaaaagtcaaa
gagagttttactttctactgtgagcctaaatttgatggggcaagtctaaaccttatctac
gaaaatggtgtgctcaagcaagccatcaccagaggcgatggaagcatcggcgaagatgtc
accgaaaatgttaaaaccatcggctccattcctttgcgcattgattacctagaacctatc
gaaattcgtggtgaagtggtcattaaaaaagcggactttgaaagacttaaccaagaacgt
ctaagtcttggtgaggcgttgtttgccaacccacgcaatgccgccgcagggagccttaga
cagcttgatacgagcatcaccgcaaagcgaaaactgatgttttacccatggggcattggg
atcaatagcttaacacagagctttttgagtcaaaaaatgaatttcgtttacagccttggc
tttttaaaaccacctcgcatcgtcgtcactcaaagcgtggatgatgtgcatgcactttac
gcagaactcattgccaagcgcgatgagattgagatgatgatggacggtatggtcgtcaaa
attgatgatgtaagtttgcaagaagagctaggctatacggtaaagtaccccaaatggatg
gtggcgtttaaatttcctgcgattgagaaagtgacacgacttaaagatattaccctacaa
gtagggcgaacgggtgtcgtgacacctgtagcggaagtggaagcggtgaatatcgaaggg
gttatcgtcgagcgcgccacactgcacaattttgatgagattgagcgaaaagatgtgcgc
ataggagacagtgtcattatcatccgaagtggcgatgtgattcctaagattattaaagtg
ctgattgaacgacgaaatggaagcgaaaaagtagtcgagcgaccacttacttgtcctgtg
tgtggcagtgaacttttggatgatggcgcactcatcaaatgccaaaatctctcgtgcgtt
gcgagagttgtgggggcgatgattcactttgcatcaaaaaaagcgctcaatattgacggg
cttggcgataaaattattgagcaactttatgcgcaaaaattggttttacatgtaaaagat
ctttacactttaacggttgagcaacttctcgcattagagggctttaaagcaaaaaaagca
gacaatcttttagcggcgattgagcagagcaaaggggtgagtttagagaagtttattaac
gcccttggcattgagcatatcggcgaagtggcggctaaaaagatcgcacgagcctttggg
ttggagtggttggaagcaagctatgagcagatcatcgcgcttgaagggtttggcgaagag
atggcgaagagtttggtcgagtttattcatgtgaaccgcaccgaaaccaatgaattaatg
gccgtgattcagcctgtcgcctcaaaacttgaaataaccgagtctgcttttacgggcaaa
acagtggttttgacaggttcgatgagtaaaccacgtgatgagattaaagtgatgcttgag
aaattgggcgcaaaagtgagtggaagtgtctctaaaaagactgactttgtcatttatggc
gaagacgcaggcagtaagctctctaaagcagaagaacttggtgtcaaaacactctcagag
agtgaactcaatgggatggtggaatga
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