Sceloporus undulatus (fence lizard): 121919562
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Entry
121919562 CDS
T07740
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sund
Sceloporus undulatus (fence lizard)
Pathway
sund03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121919562 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sund03041
]
121919562 (SF3B1)
03036 Chromosome and associated proteins [BR:
sund03036
]
121919562 (SF3B1)
Spliceosome [BR:
sund03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121919562 (SF3B1)
Complex B
121919562 (SF3B1)
Complex C
U2 SnRNP specific factors
121919562 (SF3B1)
Chromosome and associated proteins [BR:
sund03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121919562 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
121919562
NCBI-ProteinID:
XP_042302202
LinkDB
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Position
1:192484068..192515336
Genome browser
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgtgaaatccaaggc
aaaaaagctgcccttgatgaagctcaaggggtgggccttgattccacaggatactatgat
caggagatctatggtggaagtgatagcaggtttgctggatatgtaacttcaattgcagca
actgaactagaagatgatgatgatgactactcttctacaagcttgcttggtcagaagaag
cctgggtaccatgcaccagtggcactgcttaatgacataccacagtcaactgaacagtat
gatccatttgctgaacatcgtccacaaaagattgccgatagggaagatgaatacaaaaat
cgaagacggatgatgattatttctcctgagcgacttgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacaacattta
acaaaagaagagagagaaattaggcagcagcttgcagaaaaggctaaggctggtgaactt
aaagtcgtcaatggtgctgcatctcagccaccatcaaaacgcaaacgtcgttgggatcag
actgctgaccaaactcctggtgccacaccaaagaaattatctagttgggatcaagctgag
acccctggacatactccatctctgcgttgggatgaaacacccggccgggcaaagggtagt
gagacacctggagcaacccctggatctaaaatatgggatcccactcccagtcatacgcca
gcaggagctgcaacacctggacgtggtgacacacctggtcatgcaacaccgggccatgga
ggcgcaacttccagtgcgaggaagaatcgatgggatgagactcccaaaacagaaagagat
actcctggacatgggagtggatgggctgaaactcctcgtactgatcgaggtggcgattcc
attggtgaaacaccaacccctggagcaagtaaaaggaaatcacgttgggatgaaacacct
gcaagtcaaatgggtgggagcactcctgtcttaactccaggcaaaacaccaattggcaca
cctgctatgaacatggcaacccctacaccaggtcatataatgagcatgactcctgaacag
ctccaagcatggcgatgggagagagagatagatgagagaaatagacctctttcagatgaa
gagctggatgccatgtttcctgagggttacagggttcttcctcctccagctggttatgtc
cctattcgtactccagcccgtaaacttacagcaactcctacacctctgggtggtatgact
gggttccatatgcagactgaagataggaccatgaagagtgtgaatgaccagccttcagga
aatctacctttcttaaagcctgatgacatacaatactttgataaattactggttgatgtt
gatgagtcaactcttagcccagaggaacagaaagagagaaaaataatgaaattacttttg
aagatcaagaatggcacccctccaatgagaaaggctgctttacgacagattactgataaa
gctcgtgaatttggagcaggtccactgttcaatcagattttacccctgctgatgtcaccg
actcttgaagatcaagaacgccatttgcttgtcaaagttattgacagaattttgtataaa
ttggatgacttagtgcgaccatatgtacacaagatccttgtggtcattgaaccattgctg
attgatgaagactactatgccagagtagaaggaagagaaattatttccaacttggcaaag
gcagctggtctggcaacaatgatctctaccatgcgacctgatattgacaacatggatgag
tatgttcgtaacacaacagctcgggcctttgctgttgttgcttctgctctgggcattcca
tctcttttgccctttttgaaagctgtctgtaaaagcaagaagtcttggcaggccagacac
actggcatcaagattgtgcagcaaattgctatcctgatgggctgcgcaattttacctcat
ctcagaagtttggttgaaattatcgagcatggtttggtggatgagcagcagaaagtacgc
accatcagtgctttggctattgctgctttggctgaggcagcaactccctatggcatagaa
tcctttgactctgtcctcaagcccctgtggaagggtatacgtcagcacaggggaaagggt
cttgctgccttcttgaaagctattggataccttattccacttatggatgctgagtatgcc
aactactataccagagaagtaatgctaattcttatcagagagttccagtctcctgatgaa
gaaatgaaaaagattgtgttgaaggtagtaaagcagtgctgtggaacagatggtgttgaa
gcaaactacattaagacagaaattttgcctccatttttcaagcacttctggcaacacaga
atggcactggacagaagaaattaccgacagttggttgatacaactgtggaacttgcaaac
aaagttggagcagcagaaattatttccaggattgtggatgatctgaaagatgaggctgag
cagtacagaaaaatggttatggagaccattgagaagatcatggggaacctcggtgcagct
gatattgaccacaaactggaggaacaacttattgatggcatcctatatgccttccaagaa
cagaccacagaggattctgtgatgttgaatggttttggtacagtggtcaatgctctgggc
aagcgagtgaaaccatacttaccacagatctgtggtacagttttgtggcgtttgaacaac
aaatcagctaaagtaagacagcaagctgctgatctgatatctcgtactgcagttgtcatg
aagacctgtcaagaggaaaaattgatgggacacttgggtgtggtgctctatgagtacctg
ggtgaagaatatcctgaagtactgggcagtattttaggagcacttaaagccattgtgaat
gtcataggtatgcacaaaatgactcctccaattaaagacctgctgccaagactcacacct
attttgaaaaacaggcatgaaaaggtgcaggagaattgcattgacctggttggacgtatt
gcagacaggggggcagagtatgtttctgcaagggagtggatgaggatctgctttgaactg
ctagagttgttaaaagctcataagaaagccattcgaagagcaactgtgaacacttttggt
tatattgcaaaagctattggaccccatgatgtgctggcaacacttctaaataatttgaaa
gtacaagagagacaaaacagagtgtgtactacagtagcaattgctattgtagctgaaacc
tgctctcctttcacagtgctacctgcactcatgaatgaatacagagttccagaactgaac
gtccagaatggtgtattaaaatctctttccttcctctttgaatatattggagaaatggga
aaagactacatttatgctgttaccccattgcttgaagatgctttaatggacagggacctt
gttcacagacaaacagcgagtgctgtggtccagcatatgtcccttggagtatatggcttt
ggctgtgaagattcattgaatcacttgttaaattatgtgtggcccaatgtgtttgagaca
tcacctcatgtcatccaagcagtcatgggagccctggagggcctgagagtggctattgga
ccttgccgaatgttgcagtattgtttacagggtttgtttcaccctgccagaaaagtcaga
gatgtgtattggaagatctataactccatctacattggttcgcaggatgcattaatagca
cattatccacgaatctataatgatgaaaagaacacctacattcgttatgaacttgattat
gtcttgtaa
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integrated database retrieval system
