Streptococcus suis SS12 (serotype 1/2): SSU12_0121
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Entry
SSU12_0121 CDS
T02025
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
suo
Streptococcus suis SS12 (serotype 1/2)
Pathway
suo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
suo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SSU12_0121 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suo03021
]
SSU12_0121 (rpoB)
03400 DNA repair and recombination proteins [BR:
suo03400
]
SSU12_0121 (rpoB)
Enzymes [BR:
suo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SSU12_0121 (rpoB)
Transcription machinery [BR:
suo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SSU12_0121 (rpoB)
DNA repair and recombination proteins [BR:
suo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SSU12_0121 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
AER14320
LinkDB
All DBs
Position
111000..114572
Genome browser
AA seq
1190 aa
AA seq
DB search
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFQDFLDYGLKEVFEDVLPVSNFTD
TMELEFVGYELKEPKYTLEEARAHDANYSAPIYVTFRLVNKETGEIKTQEVFFGEFPIMT
EMGTFIINGAERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSELVRNTIEKDIHKNPADSRTDEALKE
IYERLRPGEPKTAESSRSLLTARFFDPRRYDLAPVGRYKINKKLNLRTRLLNQTLAEHVI
NGETGEIVLEAGTVLSRDVLEKVEAQFDELNLVEYIPNDNAVLLEPVLLQKFKIVAPKDP
ERVVTVIGNANPAENVRTVTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLA
NQVRIGLTRMERNLRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNPL
SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL
NKYGFIQTPYRKIDRATGTVTNEIVWLTADEEDAYIVAQSTSPLDENNRFVDKIVMGRHQ
GNNQEFPADSADFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPY
VGTGMEYQAAHDSGAAIIAQHDGKVVYADADKVEVRREDGSLDVYHISKFRRSNSGTAYN
QRTLVKLGDIVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDD
VYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALRNLDEMGIIRIGAEVKEGDILVGK
VTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSGV
NMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSR
MNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEP
FDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVL
DEDNNEVELRDLDEGEDDDIIHVDDLEKARAKAAADAAAAFAAEEAEGKE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgaagttcagtacggtaagcaccgtacccgtcgtagtttttcaagaatc
aaggaagttcttgatttaccaaatttgattgaaattcaaacggactctttccaagacttt
ttagattacggtttgaaagaagtctttgaagatgtacttccagtttcaaactttacggat
accatggaattggaattcgttggttatgaattgaaagagcctaaatacacattggaagag
gcgcgtgcgcatgatgcgaactactcagctccaatttatgtaactttccgtctggtgaat
aaagaaactggcgagatcaagacacaagaagtcttcttcggtgagtttccaatcatgact
gaaatgggtaccttcatcatcaacggtgcagagcgtatcatcgtttctcagttggttcgt
tcaccaggtgtctacttcaatgataaagtagataagaatggtaaagtaggttatggatca
acggttattcctaaccgtggagcttggctggaattggaaacagactcaaaagacattgcc
tacactcgtattgaccgtacgcgtaagattccgttcacaacgcttgttcgtgcgcttggt
ttctcaggcgatgatgaaatctttgacatcttcggtgatagcgaattggttcgcaatacc
atcgaaaaagatattcataaaaacccagcagattctcgtacggatgaagcgcttaaggaa
atctatgagcgccttcgtccaggtgaaccaaagacagctgaaagctctcgtagtcttttg
acagctcgtttctttgacccacgtcgttacgacttggcacctgttggtcgttataagatt
aataaaaaactcaaccttcgtactcgtttgctcaaccaaacacttgctgagcatgtgatt
aacggtgagacaggcgaaattgtcttggaagctggtactgtcttgagccgtgacgtgctt
gaaaaagtagaagcacaattcgatgagctcaacttggtagaatacattccaaatgacaat
gctgttcttcttgagccagttcttttgcagaaattcaagattgtagctcctaaggatcca
gaacgtgttgtgacggtgattggtaatgctaatcctgcagaaaacgtacgtacagtaaca
cctgcggacatcttggctgaaatgagctacttcctcaacttggctgagggtcttggtcgt
gtagatgatattgaccacttgggtaaccgtcgtattcgtgccgttggtgaattgcttgct
aaccaagtacgtatcggtttgactcgtatggaacgtaacttgcgtgagcgtatgtctgtt
caagacaatgaagtattgacgccacaacaaatcatcaatatccgtcctgttacagccgca
atcaaagaattctttggttcatctcagttgtcacagttcatggaccaacacaacccactt
tctgagttgtctcacaaacgccgtttgtcagccttgggacctggtggtttgactcgtgac
cgtgctggttatgaggttcgagacgttcactacactcactatggtcgtatgtgtccgatt
gaaacgcctgagggaccaaacatcggtttgatcaacaacttgtcttcttatggtcacctc
aacaagtatggcttcatccaaacaccataccgcaagattgaccgtgcaactggtacagtt
acaaatgagatcgtttggttgacagccgatgaagaagatgcttatattgtagcccaatca
acatcgccacttgatgaaaacaaccgtttcgttgataagattgttatgggacgtcaccaa
ggtaacaaccaagagttcccagcagattcagcagatttcatggacgtttcacctaagcag
gtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgtgcc
ctcatgggtgccaacatgcaacgtcaggctgttccattgattgatccaaaagcaccttac
gttggtactggtatggaataccaggctgctcacgactcaggtgcggcaattatcgctcaa
cacgatggtaaggttgtttacgcagatgcggacaaggtagaagtgcgtcgtgaagatggc
tcgcttgatgtctaccacatttctaaattccgtcgttcaaactcgggtactgcctacaac
caacgtacccttgtaaaattgggggacatcgtagaaaaaggcgacttcatcgcagatgga
ccttctatggaaaatggggaaatggctcttggtcaaaaccctatcgttgcctacatgacg
tgggaaggttacaacttcgaggatgcggttatcatgtctgaacgccttgtgaaagatgat
gtctatacatctgttcacttggaagaatacgaatcagaaacacgtgatactaagttaggc
cctgaagaaatcactcgcgaaattccaaacgttggtgaagatgcccttcgcaacttggac
gaaatggggattatccgtattggtgccgaagttaaagagggcgacattcttgttggtaaa
gtcacaccaaaaggtgaaaaagatctttctgctgaagagcgtctcttgcacgcaatcttc
ggtgacaagtcacgtgaagtacgtgatacctctcttcgtgtacctcacggtgccgatggt
gtcgttcgtgatgtgaaaatctttactcgtgccaacggtgatgaattgcaatcaggtgtt
aacatgttggttcgtgtttacatcgctcaaaaacgtaagatcaaggtcggagataagatg
gccggtcgtcacggtaacaagggtgtcgtttcacgtattgtacctgttgaggatatgcca
tatcttccagatggaacaccagttgacatcatgttgaacccactcggggtgccatcacgt
atgaacatcggtcaggttatggaacttcacttgggtatggcggctcgcaacttgggcatc
catatcgcaacaccagttttcgatggtgcaagttcagaagacctctggtcaactgttaaa
gaagcaggtatggactcagatgccaagaccattctttacgatggacgtacaggtgaacca
tttgacaaccgtgtatctgttggtgtcatgtacatgatcaagcttcaccacatggttgat
gataaacttcacgcccgctcagtcggaccatactcactcgttacccaacagccgctcgga
ggtaaggctcagtttggtggtcagcgtttcggtgagatggaggtttgggcccttgaagcc
tacggtgcttcaaacgtccttcaagaaatcttgacttacaagtcagatgatgtgacaggc
cgtctgaaagcctatgaagccatcaccaaaggtaaaccaattccaaaaccaggtgttcca
gaatcattccgcgttcttgtcaaagaattgcaatcacttggtttagatatgcgtgtcctt
gatgaagacaacaacgaagtagaattgcgtgaccttgatgaaggtgaagatgatgacatc
atccacgtagatgatcttgaaaaagcacgtgcaaaagccgcagctgacgcagccgcagcc
tttgcagcagaagaagcagaaggcaaagaataa
DBGET
integrated database retrieval system
