Superficieibacter sp. HKU1: P0H77_21565
Help
Entry
P0H77_21565 CDS
T08896
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
supe
Superficieibacter sp. HKU1
Pathway
supe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
supe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0H77_21565 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
supe03021
]
P0H77_21565 (rpoB)
03400 DNA repair and recombination proteins [BR:
supe03400
]
P0H77_21565 (rpoB)
Enzymes [BR:
supe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0H77_21565 (rpoB)
Transcription machinery [BR:
supe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0H77_21565 (rpoB)
DNA repair and recombination proteins [BR:
supe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0H77_21565 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WES68149
LinkDB
All DBs
Position
complement(4527236..4531264)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIA
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKARRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YVDESTGELICPANMELSLDLLAKLSQAGHKRIETLFTNDLDHGAYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMRKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVAGGVEADKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLNTFSDEEVMRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggaaagcgtccgcag
gttctggacattccttatctcctttccatccagcttgactcgtttcagaagttcatcgag
caagatcctgaagggcagtatggtctggaagccgcattccgttccgtattcccgattgcc
agctatagcggtaattctgagctacagtacgtcagctatcgcctgggcgagccagtattt
gacgtgcaggaatgtcagatccgtggcgtgacctattcggcaccgctgcgcgtaaaattg
cgtctggtgatctacgaacgtgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtgtacatgggcgaaattccgctcatgaccgacaacggtacctttgtcatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagccctggcgtcttctttgactccgac
aaaggcaaaacccactcttcgggtaaagtgctgtataacgcgcgtatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtattgaccgt
cgccgcaaactgcctgcgactatcattctgcgcgcgctgaactacaccactgagcagatt
ctggatctgttctttgaaaaagtcatttttgaaatccgcgataacaagctgcagatggaa
ctggtgcctgaacgcctgcgtggtgaaacggcctcctttgacattgaagctaatggcaag
atttacgttgaaaaagcgcgccgtattaccgcacgccatattcgtcagctggaaaaagac
gatatcaaacatatcgaagttccggttgagtacatcgcaggtaaagtcgcggctaaagac
tacgttgacgaatccactggtgaactgatttgcccggcgaacatggagctgagcctcgat
ctgctggctaagctgagccaggctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggggcgtatatttctgaaacggttcgcgtcgacccgactaatgatcgcctg
agcgcgctggtagaaatctaccgtatgatgcgccctggcgagccgccgacacgtgaagcg
gctgaaagcctgtttgagaacctgttcttctctgaagaccgctacgatctgtctgcggta
ggccgtatgaagttcaaccgctctctgctgcgcgatgaaatcgaaggctctggtatcctg
agcaaagacgacatcatcgaagtcatgagaaagctcatcggtatccgtaacggtatcggc
gaagttgatgacatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gaaaaccagttccgcgttggcctggttcgcgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaaaccgatttctgcg
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtttgacccgt
gaacgcgcaggcttcgaagttcgagacgtacacccgacgcactacggtcgcgtatgtcct
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatacggtttcctcgaaacgccgtatcgtaaagtgaccgacggtgtcgtaacc
gatgaaattcactacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggttacctgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccactcagcaggtg
gtttccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccaacgctgcgcgctgataagccgctggtg
ggtaccggtatggaacgtgctgttgccgttgactccggtgttacggcagttgctaagcgt
ggcggtaccgtacagtacgtcgatgcatcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggcgaagcgggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgtattaaccagatgccgtgtgtgtctctgggtgagccaattgagcgcggc
gacgtgctggcagatggcccgtctaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagaccgtttcaccaccatccatattcaggaactggcatgtgtgtcc
cgtgacaccaagctggggccagaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggtgcggaagtcaccggtggc
gacatcctggtaggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggtgtttccggtacgatcatcgacgttcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctcaagcaggccaaaaaagacctg
tctgaagaactgcagatcctggaagccggcctgttcagtcgtatctacgcggtgctggtt
gccggtggcgttgaagctgacaagctcgacaaactgccgcgcgatcgctggctggaactc
ggcctgaccgacgaagagaaacaaaatcagctggaacagctcgctgaacagtacgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgtaaaatcactcagggcgac
gatctggcaccgggcgtgctgaaaatcgttaaggtatacctggccgttaaacgccgtatc
cagcctggtgacaaaatggcaggccgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgcctcacgacgctaacggcacgccggtagacatcgtgctgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gccaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgagttcatccagcgtgcctacgatctgggcgctgacgttcgtcagaaagttgac
ctgaacaccttcagcgatgaagaagtgatgcgcctggcagaaaacctgaagaaagggatg
ccgatcgcaacgccagtcttcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagattaccctgttcgacggtcgtaccggtgagcag
ttcgagcgccaggtaaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaaaatgcacgcgcgttctaccggttcttatagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagct
tatggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaatcatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgttcgctgggtatcaacatcgagctggaa
gacgagtaa
DBGET
integrated database retrieval system
