Sulfurifustis variabilis: SVA_1891
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Entry
SVA_1891 CDS
T05321
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sva
Sulfurifustis variabilis
Pathway
sva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVA_1891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sva03019
]
SVA_1891
03009 Ribosome biogenesis [BR:
sva03009
]
SVA_1891
Enzymes [BR:
sva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SVA_1891
Messenger RNA biogenesis [BR:
sva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVA_1891
Ribosome biogenesis [BR:
sva03009
]
Prokaryotic type
rRNA processing factors
SVA_1891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAU48445
UniProt:
A0A1B4V4V2
LinkDB
All DBs
Position
1929591..1931840
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AA seq
749 aa
AA seq
DB search
MKRILFNATHPEELRLAIVDGQKLLDLDIESSTYQQKKGNIYKARVTRVEPSLEAAFVDY
GTERQGFLPLKEISRVYFTGHDERTPLGQVRIKDVIKEGQELVVQVDKEERGTKGAALTT
FISLAGRYLVLMPNNPKGGGISRRIEGEERAELREAMAHLTVPEDYSLIARTAGIGRSPE
ELQWDLDYLVHLWDAISKAAAERPASFLIYQESNLVVRAVRDYLRQDIGEVLVDNPEIYE
RMKKFMQQVAPQWLDRLKLYKDETPLFSRFQIEHQIESAFSREVRLESGGAIVFDKTEAV
VTIDVNSARATKGADIEETALNTNLEAAEEVARQLRLRDLGGLIVIDFIDMTPVRNQRMV
EQRLMDSLKVDRARVQVGRISRFGLLEMSRQRLRPALGETSSLVCPRCVGTGHIRSVQSS
ALSVLRMIQEEAMKENTAAVHVHLPVETATWLLNEKRHELTGIESRIGTPVMVIPDETME
TPHYHIRRLRMDEYEAEADIPSYDIEIVEEEEEEAPPRVAPAAEKPVIGPLTHGAAPPAP
MAPARKPAGLIKRLISGLFGGEPAIPEPAPRQAPPAPARDRGPRDHRRPPRVPKPAPTEA
AKPPRPHRPSAPAAQEAGTGAQERRESSRRRGRRGRRGRSGTRPETAPRAESGADQGREA
SSRQGVPPRREHPHSGNGQASRTPETPSHPAENEGASPVPTPISTPAAPSPAAAPSASQV
PRREESAVSLVQVETRRDEGNDHAEGKTE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatacttttcaacgcaactcatccggaggagttgcgcctcgccatcgtcgac
ggccagaagctcctcgacctcgacatcgagtcctccacctaccaacagaagaagggcaat
atctacaaggcccgcgtcacgcgggtcgagccaagcctggaagcggcgttcgtcgactac
gggacggagcgccagggcttcctgcccctcaaggaaatttcccgcgtttacttcaccggg
cacgacgaacgcacgccgctcggccaagtccgcataaaggacgttatcaaggaaggccag
gaactcgttgttcaggtggataaagaagagcgcggcaccaagggcgcggcactgaccacc
ttcatctccctggcgggccgctacctcgtcctcatgcccaacaaccccaagggcggcggc
atttcccgccggatcgagggggaggaacgggccgagctgcgcgaagccatggcgcacctt
acggtaccggaagactactcgctcatcgcccgcaccgcggggatcgggcgctcgcccgag
gagctccagtgggatctcgactacctggtgcacctctgggacgcgatcagcaaggcggcg
gccgagcggccggcctcgttcctgatctatcaggaatccaacctggtcgtgcgcgccgtg
cgggactaccttcggcaggacatcggggaggtgctggtcgacaaccccgagatctacgag
cgcatgaagaagttcatgcagcaggtggccccccagtggctggaccgcctgaagctctac
aaggacgagacacccctattttcgcgtttccagatcgagcaccagatcgagtccgcgttt
tcccgtgaagtacgcctggagtccggcggagccattgtgttcgacaagaccgaggcggtc
gtcaccatcgacgtgaactcggcgcgggcgacgaagggtgcggacatcgaggagaccgcg
ctgaacacgaacctcgaggcggccgaggaggtcgcccgccagctccggctgcgcgatctg
ggcggcctgatcgtcatcgacttcatcgacatgacgccggtgcggaaccagcggatggtg
gagcagcgcctcatggactccctcaaggtcgaccgcgcacgggtgcaggtcggtcgcatc
tctcgcttcgggctgctcgagatgtcccgccagcgcctgcgcccggccctcggggaaacc
tcctcgctcgtgtgcccccggtgcgtcgggaccggccacatccggtccgtgcagtcttcc
gccctctccgtgcttcgcatgattcaggaggaggcgatgaaggaaaacacggccgccgtg
cacgtgcacctgccggtcgagaccgccacctggctgctcaatgagaagcgccacgagctc
accggcatcgagtcccgcatcggcacgccggtcatggtgatcccggacgagaccatggag
acgccccattaccacatacgtcgtctgcgcatggacgagtacgaggccgaggcggacatc
cccagctacgacatcgagatcgtcgaggaggaagaggaagaggcgccgccacgcgtcgcg
cctgccgcggaaaagccggtgatcggaccgctgacgcacggagcggcgccaccggcgccg
atggcgccggccaggaaaccggccggacttatcaagcgccttatcagcgggctcttcggc
ggggagccggccatccccgaaccggccccccgtcaggcaccgccagctcccgcacgcgac
cggggtccgcgcgaccaccgtcgcccgccgcgcgtaccgaagcccgcgccaacggaagcg
gcgaagccgccccgcccgcatcgcccaagcgcgccggcggcccaggaggcgggtaccggc
gcgcaggagcgacgtgagagcagtcgtcgccgcggccgtcgcggccgtcgcggacgctcc
ggcacccgtccggagacggcgccgcgcgcggaatccggtgccgatcaagggcgcgaggca
tcatcgcggcagggggtgcccccgcgccgcgaacatccccacagcggcaacggccaggca
tcgcggacacccgaaacaccctctcatccggccgagaacgaaggggcatcgcccgtgccg
accccgatctcgactccggctgcaccgtcgccggcggctgcgccttcggcttcgcaggtt
ccccggcgggaagagtcggcggtatcgctggtgcaggtcgagacacggcgcgacgaagga
aacgaccacgccgagggcaagaccgagtaa
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