Streptococcus vestibularis: NCTC12167_01815
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Entry
NCTC12167_01815 CDS
T07051
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
svb
Streptococcus vestibularis
Pathway
svb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12167_01815 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svb03021
]
NCTC12167_01815 (rpoB)
03400 DNA repair and recombination proteins [BR:
svb03400
]
NCTC12167_01815 (rpoB)
Enzymes [BR:
svb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12167_01815 (rpoB)
Transcription machinery [BR:
svb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12167_01815 (rpoB)
DNA repair and recombination proteins [BR:
svb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12167_01815 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
VED89672
LinkDB
All DBs
Position
1:complement(1817123..1820704)
Genome browser
AA seq
1193 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKEFLDTGLKEVFEDVLPISNFTD
TMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIVDIFGDSELVRNTVEKDIHKNPADSRTDEALKE
IYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGRYKVNKKLNIKTRLLGQTIAENLV
DPETGEILLEAGTEMTRDVIDSIAEHLDGDLNKFVYTPNDYAVVTEPVVLQKFKVVAPND
PDRVVTIVGNANPDDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRIRAVGELL
ANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFIQTPYRKVDRATGKVTNEVVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGRH
QGNNQEYPSHLVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
YVGTGMEYQAAHDSGAAVIAQHDGKVVYSDADKVEVRREDGSLDVYTIQKFRRSNSGTAY
NQRTLVKVGDIVEKGDFIADGPSMEGGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEFESETRDTKLGPEEITRELPNVGEEALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNILQEILTYKSDDVNGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDHEVELRDLDEGEDDDVMHVDDLEKARVQQAQEATELEKDKEEASDKTE
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaagcatcgtacccgtcgtagtttttcaagaatc
aaagaagttcttgatttaccaaacttgattgaaatccaaacggattcattcaaagaattc
ttagatactggtcttaaagaggtttttgaggatgtacttcccatttcaaacttcacagac
accatggaattggaatttgttggttacgaattgaaggaacctaagtatacacttgaggaa
gctcgtatccacgatgcatcatactcagcaccaatctttgtgactttccgccttattaac
aaagaaactggtgaaatcaaaactcaggaagtcttcttcggagattttccaattatgact
gagatgggtactttcatcatcaatggtggtgaacgtattatcgtttctcagttggtgcgt
tcacctggtgtttactttaacgataaggttgataaaaacggcaaagtgggttacggatca
acagttattcctaaccgtggggcatggcttgagcttgaaacagattcaaaagatatcgcc
tacactcgtatcgaccgtacacgtaagatcccattcacaacgcttgtgcgtgcgcttgga
ttctcaggtgatgacgaaattgttgatatctttggtgatagcgagttggttcgtaacact
gttgaaaaagatatccacaaaaatccagcagattcgcgcactgatgaagcacttaaagaa
atttatgaacgacttcgtccaggtgaacccaaaactgctgacagctcacgtagcttgctt
gtagctcgcttcttcgacccacgtcgttacgacttggctgctgttggtcgttacaaagtt
aacaaaaaacttaacatcaagacacgtcttttgggacaaacaattgctgaaaacttagta
gatcctgaaacaggtgaaatccttcttgaagctggtactgaaatgacacgtgatgtgatt
gattcaatcgcagaacacttggatggtgatttgaacaaatttgtatacacaccaaacgat
tatgcggtggttacagaacctgttgttcttcaaaaattcaaggttgttgcaccaaatgat
ccagatcgtgtggttacaattgttggtaatgccaacccagatgataaagttcgtgctttg
acaacagcggatatcttggctgaaatgagctacttcctcaaccttgctgaaggtatcggt
aaagtagacgatatcgaccaccttggtaaccgtcgtatccgtgctgttggtgaattgctt
gctaaccaattccgtattggtttggctcgtatggaacgtaacgtgcgtgaacgtatgtca
gttcaagataatgaagtcttgacaccacaacaaatcatcaatattcgtcctgtaactgca
gctgttaaagaattcttcggttcttcacagttgtcacagttcatggaccagcacaaccca
ttgtcagagttgtcacacaaacgtcgtttgtcagccttgggacctggtggtttgacacgt
gaccgtgccggatatgaagttcgtgacgtgcactacacgcactacggtcgtatgtgtcca
attgaaacacctgaaggacctaacatcggtttgatcaataacttgtcttcatatggacac
cttaacaagtacggtttcattcaaacaccataccgtaaagttgaccgtgcaactggtaaa
gtaaccaacgaagtggtttggttgactgctgacgaagaagatgagtacacagttgctcag
gccaactctaagttgaacgaagatggaacatttgcagaagaaattgtcatgggtcgtcac
caaggtaataaccaagaatacccatcacaccttgtagatttcgtggatgtttctcctaaa
caggtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactctaaccgt
gccctcatgggtgccaacatgcaacgtcaggctgtgcctttgattgatccaaaagcacct
tatgttggtactggtatggaatatcaagctgcccacgattcaggtgctgcagttatcgct
caacacgacggtaaagttgtttattctgacgccgataaggttgaagttcgtcgtgaagat
ggttctcttgatgtttatactattcaaaaattccgtcgttcaaactcaggtactgcctac
aaccaacgtactttggttaaggttggtgatattgttgaaaaaggagactttatcgctgac
ggtccatctatggaaggtggcgaaatggccctcggtcaaaaccctattgtcgcatacatg
acatgggaaggttacaacttcgaggatgccgttatcatgagtgaacgcctcgtgaaagac
gatgtttatacatctgttcacttggaagaattcgaatcagaaacacgtgatacaaagctt
ggacctgaagaaatcacacgtgaattgccaaacgttggtgaagaagcccttaaagacctt
gacgaaatgggtattatccgtattggtgctgaggttaaagaaggtgatattcttgttggt
aaggtaacacctaagggtgaaaaagacctttctgctgaagaacgtcttctccatgctatc
tttggtgataaatctcgtgaagtacgtgatacatcactccgtgtacctcacggtggtgat
ggtgtcgttcgtgatgttaaaatctttacacgtgcaaacggtgatgaattgcaatcaggt
gttaacatgcttgttcgtgtttacatcgctcaaaaacgtaaaatcaaggtcggagataag
atggccggtcgtcacggtaacaaaggggttgtttctcgtattgttcctgttgaagacatg
ccttaccttccagacggtacaccagttgatatcatgttgaaccctcttggggtgccatca
cgtatgaacattggtcaggttatggaacttcaccttggtatggctgctcgtaacttgggt
atccacatcgcaacaccagtctttgatggggcaagctcagaagatctctgggatactgtt
cgtgaagctggtatggacagcgatgctaagacaatcctttacgatggccgtacaggtgag
ccgtttgataatcgtgtgtcagttggtgtcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgcccgttcagttggtccttactcacttgttactcaacaacctctt
ggtggtaaagcacaatttggtggacaacgtttcggtgagatggaggtttgggcccttgaa
gcttacggtgcatcaaacattcttcaagaaatcttgacttacaagtctgatgacgttaat
ggacgtttgaaagcctatgaagctatcactaaaggtaaaccaattccaaaaccaggtgta
ccagaatcattccgagtacttgttaaagaattgcaatcactcggtcttgatatgcgtgtc
cttgatgaagacgatcatgaagttgaattgcgtgatcttgatgaaggtgaagatgacgac
gtcatgcacgttgatgatcttgaaaaagcacgtgtacaacaagcccaagaagctactgaa
ttagaaaaagataaagaagaagcttcagataaaacagaataa
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