Streptomyces viridosporus: CP969_27925
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Entry
CP969_27925 CDS
T07568
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
svd
Streptomyces viridosporus
Pathway
svd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP969_27925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svd03019
]
CP969_27925
03400 DNA repair and recombination proteins [BR:
svd03400
]
CP969_27925
Enzymes [BR:
svd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP969_27925
Messenger RNA biogenesis [BR:
svd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CP969_27925
DNA repair and recombination proteins [BR:
svd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CP969_27925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
PglZ_C
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
QEU88094
UniProt:
A0ABX6AJR2
LinkDB
All DBs
Position
6038098..6040257
Genome browser
AA seq
719 aa
AA seq
DB search
MDDLELRTEADAILAELVGAPEGSARLREDQWRAVAALVRERRRALVVQRTGWGKSAVYF
VATALLRRRGSGPTVIVSPLLALMRNQVESAARAGIRARTINSANPEEWDAIHEEVERGE
TDVLLISPERLNSVEFRDQMLPKLAATTGLLVVDEAHCISDWGHDFRPDYRRLRAMLAEL
APGVPVLATTATANARVTADVAEQLGTGGGEALVLRGPLERESLRLGVVRLPDAAHRLAW
LAEHLDELPGSGIVYALTVAAAEETTDYLRRRGFRVASYTGRTENADRLQAEADLLENRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVAHADVLLLPGKEDEAI
WRYFADTAFPPEAQVRQTLSALAGAGRPLSAPALEATVDLRRTRLETMLKVLDVDGAVKR
VKGGWTATGADWAYDAERYARVARQRAAEQQAMRDYVSTDRCRMEFLRRQLDDEGAAPCG
RCDNCAGAWADPSVSAEALTGAAKELDRPGVTVEPRRMWPTGMPALGVDLKGRIPVAEQC
STGRALGRLSDIGWGNRLRPLLAEDAPDGPVPDDVLRAAVTVLADWARSAGGWASNDPDA
PARPVGVVAVPSLTRPLLVASLARGVADIGRLPFLGTLAYTGPSGAHAARRSNSAQRLRA
LSGAFTVPGELADALAGASGPVLLVDDSTDSGWTLAVAARLLRRAGADQVLPLVLATAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctggagctgcgtaccgaagccgatgccatcctcgccgagctcgtcggtgcc
ccggaagggtcggcgcggctgcgggaggaccagtggcgggcggtggcggccctagtgcgg
gagcgccggcgggccctggtggtgcagcgcacgggctggggcaagtcggcggtgtacttc
gtggccaccgccctgctgcgccgtcgcggctccggcccgacggtgatcgtctcgccgctg
ctggcgttgatgcgcaaccaggtcgagtcggccgcgcgggccggtatccgggcgcgcacc
atcaactcggccaacccggaggagtgggacgccatccacgaggaggtcgagcgcggcgag
accgacgttctcctcatcagtccggaacgcctcaactccgtggagttccgcgatcagatg
ctgcccaagctcgcggccacgaccggcctgctggtggtcgacgaggcgcactgcatctcc
gactggggccatgacttccggcccgactaccgtcggctgcgggcgatgctcgccgaactc
gcccccggtgtgccggtgctcgcgacgacggcgaccgccaacgcgcgggtcaccgcggac
gtggccgagcagttgggcaccggcggcggcgaggccctggtgctgcgggggccgctcgag
agggagagcctgcggctcggagtcgtccggctgccggacgccgcgcaccgcctggcctgg
ctcgccgagcacctggacgagctgccgggatccgggatcgtctacgcgctgacggtggcc
gcggccgaggagaccacggactacctgcgccggcgcggtttccgggtggcctcctacacg
gggcgcacggagaacgccgaccggctgcaggccgaggccgacctgctggagaaccgggtc
aaggcgctggtggcgacatcggcactgggcatgggcttcgacaagccggacctgggcttc
gtggtccacctcggttcgccgtcctcgccgatcgcctactaccagcaggtggggcgggcg
ggccgcggtgtggcccacgccgacgtgctgctgctgccgggcaaggaggacgaggccatc
tggcgctacttcgccgacaccgccttcccgcccgaggcgcaggtccgccagaccctctcg
gccctcgcaggtgcgggacgccccctgtccgcaccggccctggaggcgacggtggacctt
cggcgcacccgtctggagacgatgctgaaggtgctcgacgtcgacggcgcggtcaagcgg
gtgaagggcggctggacggccacgggagccgactgggcgtacgacgccgagcgctacgcc
agggtggcgcggcagcgcgccgccgagcagcaggccatgcgcgattacgtgagcacggac
cggtgccggatggagttcctgcgccggcagctggacgacgagggggcggccccgtgcggc
cgttgcgacaactgcgcgggcgcctgggccgacccctcggtctcggcggaggcgttgacg
ggggcggcgaaggagctggaccgcccgggggtgacggtcgagccgcgccggatgtggccg
acggggatgcccgcgctcggcgtcgacctcaagggccgcatcccggtcgcggagcagtgc
tccaccggacgcgccctggggcggctctcggacatcggctggggcaaccggctgcgcccg
ctgctggccgaggacgcgcccgacgggccggtccccgacgacgtcctgcgggccgcggtg
acggtcctcgccgattgggcgcgctccgcggggggctgggcgtcgaacgacccggacgcc
cccgcccggccggtgggcgtcgtcgccgtaccgtccctgacccggcccctgctggtcgcg
tcgctggcccggggagtggcggacatcgggcgcctgcccttcctgggcaccctggcgtac
acgggcccgagcggcgcgcacgcggcccggcggagcaactcggcccagcgcctccgggcg
ctgtccggggccttcaccgtccccggggaactggccgacgcactggccggtgcctccggg
cccgtcctgctcgtggacgacagcacggactccggctggaccctcgccgtcgccgcccgc
ctgctgaggcgggcgggggccgaccaggtcctgccgctggtgctcgccacggcgggctga
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