Subdoligranulum variabile: NQ490_14005
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Entry
NQ490_14005 CDS
T08454
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
svj
Subdoligranulum variabile
Pathway
svj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ490_14005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svj03021
]
NQ490_14005
03400 DNA repair and recombination proteins [BR:
svj03400
]
NQ490_14005
Enzymes [BR:
svj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ490_14005
Transcription machinery [BR:
svj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ490_14005
DNA repair and recombination proteins [BR:
svj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ490_14005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UWP68028
LinkDB
All DBs
Position
2964230..2968060
Genome browser
AA seq
1276 aa
AA seq
DB search
MVKVKPVQNGRTTRMSFSRINEVIDMPNLIEIQKNSYNWFLQEGLHEVFHDIAAIEDYTG
NLVLEFVDYRLDKNPKYSIKECKERDATYAAPLYVTARLFNKQTGEVKEQEIFMGDFPLM
TDSGTFISNGAERAIVSQLVRSPGVFYGSSKDRTGKDLFTATMNPNRGAWLEYETDSQDV
FYVRIDKNRKLPVTTLIRALGLGTDEQIRQFFGNSEPKINASLEKDITHSTEEGLLEVYR
KLRPGEPPTVENSRSHLNSLFFDPRRYDLARFGRYKMNNKLALARRIAGYKAAEDIIAPL
TGELLVAKGEKINTAKANEIDAAGVTRVVVLVERKGEESTPVIVISNGCVDAQPFFSFDV
DAECGINERANFAEIRKILDATSDPEEQKELLRQNHDVLISRTVTVDDIFASINYLIGLD
HGIGVTDEIDHLGNRRVRSVGELLQNQFRIGFSRMERVIRERMTLQNQENGEITPQSLVN
IRPVVAAIKEFIGSSPLSQFMDQNNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYTH
YGRLCPIETPEGPNIGLISYLATYAKINKYGFVEAPYRRVDKATGVVTDEVVYMTADVED
EYIVAQANEPLDENNRFVRPRVSGRHRNDIQEFEASQVDFMDVSPRMMVSVATACIPFLE
NDDCNRALMGSNMQRQAVPLMVTQQPIVATGMEYKAATDSGVCILAAHDGTVEYVDAEKI
VVRCADGSADTYELIKFMRSNQGNCNNQRPIVQVGDAVKTGDVLADGPATKNGEISLGKN
ALVGFMTWEGYNYEDAVLLNEKLVREDVYTSIHIEEYETEARDTKLGPEEITRDIPNVGD
DALKDLDDRGIIRIGAEVKTGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLR
VPHGAYGIVVDIKVFTPENSDELQPGVRMCVRCYIAQKRKISVGDKMAGRHGNKGVVSRI
LPQEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVNLGYVAKALGWKVQTPVFDGAHES
DLRDCFAEARTKWHGENAPEYPTKLDRLMGEKGHIIDFSKIDLTDDGKTTVYDGRTGEQF
PNKVTVGYMYYLKLHHLVDDKIHARSTGPYSMVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEILTIKSDDVVGRVKTYEAIVKGDPIPRPGIPESFRVMLKELQSLGLDIVVQD
KEGNPVDMRQEFDDDDSSFEGSDYEVGNNVLVESELQDDYSVKDADEGFDDDLDEDSEPS
ADDLAKIEMDDPFDDE
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaggtcaagcccgtacaaaacggcagaacgacccgcatgagtttttcccgtatc
aacgaagtgattgatatgcccaatctcatcgagatccagaaaaactcttacaactggttc
cttcaggaaggtctgcatgaggtcttccatgacattgccgcgatcgaggactacaccgga
aatctggtgctggaattcgtcgattaccggctggacaagaaccccaagtactccattaaa
gaatgtaaggagcgggacgccacctatgcggcgcccctgtatgtcacggcccggctgttc
aacaagcagaccggtgaggtgaaggagcaggaaatcttcatgggcgacttcccgctcatg
accgattccggtactttcatctccaacggtgccgagcgtgccatcgtcagccagctggtc
cgttctcccggtgtgttctacggctccagcaaggaccgtaccggcaaggacctgttcacc
gcaaccatgaaccccaaccgcggcgcctggctggaatacgagaccgactcccaggacgtt
ttctatgtccgtatcgacaagaaccgcaagctgcctgtcaccacgctgatccgtgcgctg
ggtcttggcaccgatgagcagatccgtcagttcttcggcaactcggagcccaagatcaac
gcttccctggagaaggacatcacccactccacggaggaaggcctgctggaagtttaccgc
aagctgcgccccggcgagcccccgacggtggaaaactcccgcagccacctgaattcgctg
ttctttgacccgcgccgctacgatctggctcgctttggccgctacaagatgaataataaa
ctcgcgctggcccgccgcattgccggttacaaggctgccgaggatatcattgcacccctg
accggcgaactgctggttgcgaagggtgaaaagatcaacaccgccaaggccaatgagatc
gacgccgctggtgtgacccgtgtggttgtgcttgtggagcgcaagggcgaggagagcacc
ccggtaatcgtcatctccaacggctgtgtggatgcccagcccttcttcagcttcgatgtg
gatgctgagtgcggcatcaacgagcgtgccaactttgctgagatccgtaagatcctggat
gccacttcggatcccgaagagcagaaggaattgctgcgccagaatcatgatgtgctgatc
agccgtactgtcacggtggacgatatttttgcatccatcaactacctgatcggtctggac
cacggcatcggcgttactgacgagatcgaccatctgggcaaccgtcgtgtgcgcagtgtg
ggtgagttgctgcagaaccagttccgcatcggcttctcccgcatggaacgcgtcatccgc
gagcgtatgaccctgcagaaccaggaaaacggcgagatcaccccgcagagcctggtcaac
atccgcccggttgtggccgctatcaaagaattcatcggttccagcccgctgtcccagttc
atggaccagaacaacccgctggccgaattgacccataagcgccgtctgtccgctctgggc
cctggcggtctgtcccgtgaccgtgccggcttcgaagtccgcgacgttcactatacccat
tacggccgtctgtgccccattgagacccctgaaggccccaacatcggtctgatctcttac
ctggctacctatgccaagatcaacaagtacggctttgtggaagcaccttaccgccgtgtg
gacaaggccaccggcgtggttaccgacgaagtggtctacatgaccgccgacgtggaagat
gaatatatcgttgcccaggccaatgaacctctggacgagaacaatcgttttgtccgtccc
cgcgtttccggccgtcaccgcaacgacatccaggagtttgaagccagtcaggtcgacttc
atggacgtttctccgcgaatgatggtttccgtcgctacggcctgcatcccgttcctcgag
aacgatgactgtaaccgtgcactgatgggctccaacatgcagcggcaggctgtgcctctg
atggtcactcagcagcccattgtggccaccggtatggaatacaaagcagccaccgactcc
ggcgtctgcatcctggccgcccatgatggcactgtggagtacgtggatgccgagaagatt
gttgtccgctgcgccgatggttctgccgacacctatgaactgatcaagttcatgcgctcc
aaccagggcaactgcaacaaccagcgtcccatcgtccaggtgggcgatgcggtcaagacc
ggcgatgtgctggccgacggccccgccaccaagaacggcgagatcagcctgggcaaaaat
gctctggtaggcttcatgacctgggaaggttacaactacgaggacgccgtcctgctcaac
gagaagctggtgcgtgaggacgtctatacctccattcatattgaagagtatgagaccgag
gcccgtgacaccaagctgggacctgaagaaatcacccgcgacatccccaacgtcggcgat
gacgcgctgaaggatctggacgatcgcggcattatccgcattggcgctgaggtcaagacc
ggcgacatcctggttggtaaggtcaccccgaagggcgagaccgaactcaccgccgaggag
cgcctgctgcgcgccatcttcggtgagaaagcccgcgaagtccgcgatacctcgctgcgt
gtgcctcatggtgcctacggtatcgtggtggacattaaggtctttacccccgaaaacagc
gatgaactgcagcccggcgtccgtatgtgcgtgcgctgctacatcgcgcagaaacgtaag
atcagcgtcggcgacaagatggccggccgtcacggcaacaagggtgttgtttcccgcatt
ctgccgcaggaggatatgcctttcctgcccgacggcacgccgctggatatcgtgctgaac
cccctgggcgttccctcccgtatgaacatcggtcaggtgctggaagtcaacctgggctat
gtggccaaggctctgggctggaaggtgcagacccctgtcttcgatggtgcgcacgaatcc
gatctgcgtgattgcttcgcagaagcccgcaccaagtggcacggcgaaaacgcccctgag
tatcccaccaagctggaccgcctgatgggcgagaagggccacatcatcgacttctccaag
atcgacctgaccgatgacggcaagaccactgtctacgatggccgtaccggcgaacagttc
cccaataaggttaccgtcggctatatgtactacctcaagctgcatcacctggtcgacgat
aagatccatgcccgttccaccggcccctactccatggtcacccagcagcctctgggcggc
aaagcgcagttcggcggccagcgcttcggcgagatggaagtctgggctctggaagcttac
ggcgccgcttacaccctgcaggagatcctgaccatcaagtccgacgacgttgtgggtcgt
gtcaagacctacgaggccatcgtcaagggcgatcctatcccgcgtcccggtatccccgag
agtttccgcgttatgctcaaggagctgcagagcctgggcctggatatcgttgtgcaggat
aaggaaggcaatcccgtggatatgcgtcaggaatttgacgacgatgacagcagctttgaa
ggcagcgattacgaagtgggcaacaatgtcctggtcgagagcgagctgcaggatgactac
agcgtgaaggatgctgacgagggctttgatgacgatctggatgaggacagcgagcccagt
gccgatgacctggccaagatcgagatggacgatcccttcgacgatgaataa
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integrated database retrieval system
