Setaria viridis (green foxtail): 117839418
Help
Entry
117839418 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117839418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117839418
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117839418
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117839418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
117839418
NCBI-ProteinID:
XP_034575637
LinkDB
All DBs
Position
9:36683549..36702797
Genome browser
AA seq
2431 aa
AA seq
DB search
MIPFNPAVAAEVRSLIQGADESTFDPIYRELCQLADCSPDGCVLLLQVCVDEVLLNVGGA
KNPQSKRDLVAIIFRYCLDKPYFSTSFCEALRAIPVSNGFLETLSNELELSAAERVGVGL
ALSDSENPDLSLEGRKFTITQIEELCSNHAHSVSNDRIQEIVVFLLQTEGLSKHMDSFTN
IISLLNVKERPFYVPISLQEANCNQANSSRHTELCIGSLDDDFDSLLSEIGKQISLPDII
TELGYGCTSDIAHCKEILSHFEPLDDMGISKLLGAVVCTRIGVGETQNTYSIFLSAFGNS
QTIDSSQLTAWNIDVLVDSINEIAPGTNWAHVMENLDHEGFNIPDEASFRLLMSIYSRAC
KDPFPLHAICGTLWKNTEGQLSFLKHAVALPNDTFTFAHCTRKMAFPDLGNLNQGNQAWY
CLDLLEVLCQLAELGYAKPVRTMLDYPLIHCPEVLLLGVSHINTTYNLIQHEVLSHVFPS
MLKNTMHSRLMNYMWHINPYLTLRGFVDAHSDINCLLRTVEICEDIKILSTVLDSTPFAF
SIRLATAAFRKDHSNLEKWLTEKLSTQRATFLEECVKFLKEIVSTNYGAVEGSIHHPQAT
ISNICQDSCPVFIKVLRSHSGQLLSNQLVDELKRVEAVYESRNGGDVGRDMPPPDGGSED
IEAQANIYFQQMFAGQISIDAMIQMLSRFKESKDKREQSIFNCMISNLFEEYKFFPKYPD
AQLKLAAVLFGSVIKHQLVAHLALGIALRGVLDALRKSIDSKMFMFGTTALEQFMDRVIE
WPQYCNHILQISHLRGTHAELVSAIEQALAKISLSQNEPNLGAMLPVDQRGSGSQSIENI
ESSEASWQFINSTPTQLDRTISSFALQQRNQGFLGERSKGSTNTSQAKTMMPIGQPPLAS
TSSDLGVNPKATVSLSSQASHHSSTASGLSQPSGFLRSRSSAPSGILRQPSYTTGFGAAL
NIETLVAAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAKEFNEVLQEQYYPWFAQ
YMVMKRASIEPNFHDLYLKFFDKVNSKSLNKEIMKATYENCKVLLQSDLIKSSSEERSLL
KNLGSWLGKFTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYRP
PNPWTMGILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQVVGNP
DFSNKDVSTSQTSAAAEVSSGIVPSMNHVELQPDINSTSRATSLPNMLNQYAAPIRLPPN
SMVEDDKVALIMPEQVTSHSLTQVAPPQTPSPSPFSLSQLMAAIPRADIYFRINEKLNSL
GPQLQYSKIMDVALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMESDDGTISRSAHL
MVGTLAGSLAHVTSKEPLRVALLSHLRSLVQNLISNSETTEQIIQILVNDNLDLGCALTE
TVATRKAVEMIDGDIKQPFSQLRRQKELQGSAYYDVSPYTQGLSRVPDVLRPKPSGNLSA
VQRRVYEDFITVWHSQSSQNAAATTPATTVAVAPTDSSIASAHGPILAPSASSSFSTLQF
APFTSANQSTELIPDKTDPGATQLSGVSAQVGTADSSGQVSGIANVASVFPPMASGDLLV
GELATTTKDIGAAIQPSPTVAINRLGSAFPELLNTGDALERYQHVWQKLEALIANNGKDG
EIQSIIAEVPDILFRCVSRDEAALAVAQKVFRSLYENASKNTFVTWLLATLVAVRDVCKL
VVKELTSWVIYSDEEKKFNMDIIVGLIRSDLLNLGEYNVHLAKLIDGGRNKTATEFAISL
IQTLVTQDSSSVSELFNVVDVLSKLATRPGSPDSLQHLIEIARSTFNNTANYAAAKDEKV
IQSRDKKVLSVRPLMNNEEDNADGIAFANAADFQDKVAVLFSEWCQICDHPAMGDSVYNN
YIVQLQQNGLLKGDDVTDRFFISLTELAIAHSLVSDQTIAPSGLSQQSSQQQQISYFSID
SYSKLVTSVVKQSVDLGPNKGSLLHKILAVTARIIQKDAEEKKVSFNPRPYFRLFINWLS
ELTTSDLHHDSANFQILTAFANAFHILQPLRVPAWSFAWLELVSHRCFMPKLLMCNLQKG
WPFFQRLLVDLFKFMEPYLRNAELGQPILLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDV
IPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISIAPRIMTDVDAALKAKQMKAQ
VDEYLKRPEGSLFLTDLKQKLLLPQNEANVAGTRYNVPLVNSLVLYVGMQAVQQLQQNKA
NASASAQINQSPQMDIFQIETATEMFRNLVMTMDTEGRYLILNAIANQLRYPNSHTHYFS
FIILYLFAEATQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWTRSFTHC
APEIEKLFESVARSCGGKGADDGIGLGDGGH
NT seq
7296 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgttcaaccccgcggtcgccgcggaggtccgctccctgatccagggcgccgac
gagtccaccttcgaccccatctaccgcgagctctgccagcttgcggattgcagccctgat
gggtgcgttttgttgcttcaagtgtgtgtggacgaagtgctgctgaatgttggtggggca
aagaacccccaatcaaaacgtgacctcgtagccatcattttcagatattgtttggataaa
ccctatttcagcaccagtttctgtgaagcactgagggcaatacctgtcagcaatgggttc
cttgaaacactgtccaatgaacttgagctatctgcagctgagagggttggagttggactt
gctctgtcagattctgaaaatccagatttgagtctggaagggaggaaatttacaattact
caaattgaggagttatgctcaaatcatgctcattctgtatcaaatgatcggattcaggag
attgtggtgtttcttctccagactgaaggcctctcaaagcatatggactcttttactaac
ataatctccctactaaatgtgaaagagaggccattctatgttcctatctcacttcaggaa
gccaattgcaatcaagcaaattcttcaagacatacggagctgtgcattggtagcttagat
gatgattttgattcccttctatctgaaattggaaaacagataagcctgcccgatattatc
actgaactgggatatgggtgtacttctgatattgctcattgtaaggagatactatcacac
tttgagcctcttgatgatatgggaatatcgaagttactcggcgctgttgtttgcactcgt
attggtgttggagagactcaaaacacatattcaatattcctttcggcttttgggaacagc
caaacaattgattcatctcagctgactgcctggaatatagatgtccttgtggattcgatc
aatgaaattgcacccggaactaactgggcgcatgttatggaaaatctcgatcatgagggt
ttcaatatccctgatgaagcatcttttcgtttattgatgtctatatattctcgagcttgc
aaggacccattcccacttcatgcaatctgtgggacattgtggaaaaatacagaaggacaa
ctgtcattcttgaaacatgcagtggctttgccaaatgatacatttactttcgcacattgt
accaggaagatggcttttccagacttgggaaatcttaaccaaggcaatcaggcttggtac
tgcctagaccttcttgaggtgttatgtcagcttgctgaacttggctatgcaaagccagtg
cgaacaatgcttgattatcccctgattcattgtcctgaagtgttacttcttggtgttagc
cacatcaatactacatataatctcattcaacatgaagtattgtctcatgtgtttccttct
atgttgaagaacaccatgcacagccgtcttatgaactacatgtggcatattaacccttac
cttactcttcgaggatttgttgatgctcattctgatataaattgtcttctgagaactgtt
gagatatgtgaagacataaagatcttgtctactgtccttgattccaccccatttgctttt
agcattagacttgctacagctgcctttaggaaggaccatagcaatctggagaaatggctt
actgaaaagttgagtacacaaagagcgacttttctcgaggaatgtgttaagttcttgaaa
gaaatagtaagcacaaattatggtgctgtggaaggttccattcaccatcctcaagctact
atttcaaatatctgccaggactcttgccctgtgtttataaaggttcttcgttctcactct
gggcagctgttgtctaaccaactagtggatgaacttaagagagttgaggcagtgtatgaa
tcaaggaatggtggtgatgtaggaagggacatgccccctcctgatggaggttctgaagac
attgaagctcaggcaaatatttattttcaacagatgtttgctggacagataagcattgat
gctatgatacagatgctgtcacgcttcaaagaatctaaagacaagagggagcaatcaatt
ttcaactgcatgatctcaaatttgtttgaagaatacaagttcttcccaaagtatccagat
gcacaacttaaattagctgccgtgctttttggctctgtcataaagcatcaacttgtggcc
cacctggcactcggaattgctctacgaggtgttctcgacgccctgcgtaaatctattgat
tcaaagatgtttatgtttggtacaacagcgttggagcaatttatggatcgagtaattgag
tggccacaatattgcaaccatatactgcaaatttcacatcttcgcggaactcatgctgag
ttagtttctgctattgaacaagcacttgcgaagatatcattgagtcaaaatgagccaaat
ttgggggccatgcttcctgtggatcagcggggttctggttcacagtctattgagaacata
gagtcttctgaagcatcgtggcagttcataaattcaacaccaacacaactagataggaca
atttcttcctttgctctacaacagaggaaccagggttttctaggggagaggtccaaaggt
tcgactaatactagtcaagcaaaaaccatgatgcctattggtcagccacctcttgcttca
acttctagtgatctgggtgttaatccaaaggctactgtgtcactgtcctctcaagcttct
catcattctagcactgcatcaggtctttcacaaccttctggttttctacgatctagaagt
tcagctccatcaggcatccttcgacaaccttcctacactacaggatttggagctgcttta
aatattgagactcttgttgctgcagctgaacgaagagatacaccaatcgaggccccacca
tctgaagttcaagacaaaattttcttcatgatcaataatatttccacttctaatatggag
gctaaggcaaaagagtttaatgaggttttacaagaacagtattatccttggtttgcgcaa
tacatggtcatgaaaagggcaagcatcgaaccaaattttcatgacttgtatttgaagttc
ttcgacaaggttaactcaaaatccttgaataaggaaataatgaaagctacatatgagaac
tgcaaggtgttgttacaatcagatctgatcaaatctagttctgaagagcgttcattgcta
aaaaatcttggtagctggcttggaaaattcaccataggtaggaatcaaacattgcgagct
aaggaaattgacccaaaaattttaatagtggaggcttatgaaaggggtttgatgattgcg
gtcattccatttacttcaaagattcttgagccttgccattcaagtatagcatatcgtcct
ccaaatccttggacaatgggtattcttagtctacttgttgagatatataacctaccaaat
ctcaaaatgaacctgaagtttgacattgaggtcttgtttaagaatcttagtgtggacatg
aaagatgtaaaaccatcttctcttcttaaagatcggattcggcaagttgtgggaaatccg
gatttttcaaataaagatgttagtacatctcaaacatcggcagctgcagaggtctcttcc
ggtatcgttccttcaatgaaccatgtggaactacaaccagatattaatagcacttcacgt
gctacaagccttccaaatatgcttaaccagtatgcagcacctattcgtctacctccaaac
agcatggttgaagatgataaggttgctttaatcatgcctgaacaggttacctctcacagc
ctgacccaggttgcaccacctcaaactccatcaccatccccattttctctgagtcagctc
atggcagcaattccacgtgccgatatatatttcagaatcaatgaaaagcttaactctctt
ggcccacagttgcagtatagcaaaatcatggatgtggctttggataaggctattaaggag
attataggtcctgtcattcaaagaagtgttacgatagctagccgaaccaccaaggaactt
attctaaaggattatgcaatggaatctgatgatggtaccatatctcgctctgcacatttg
atggttggtacattagccggaagtttagcccacgttacttccaaggagccccttcgcgtt
gctttgttatctcatcttcgaagtcttgttcagaacctgattagtaacagcgaaaccact
gagcaaattattcaaattcttgttaatgataatctggatcttggatgtgctctaacggag
actgtggcaacacgcaaggccgttgagatgattgatggagacatcaagcaacctttttca
cagctcaggagacaaaaggaactacagggctctgcgtattatgatgtttccccttacact
caaggtctttcacgtgtacccgatgtgcttcgtcctaagccttctggtaatttgtctgct
gtccaacggcgagtatatgaggactttatcactgtttggcatagccagagtagtcaaaat
gctgctgcaacaactcctgcaacaaccgtagctgttgccccaaccgattccagtattgct
tcagctcatggcccaattttagcaccatcagcctccagtagtttctcaactctccaattt
gccccattcacatctgcaaatcagtcaacagaactaatacctgataagaccgatcctggt
gctacacaactttctggtgtttctgctcaagttggcacagccgacagttctggccaagtt
tcgggaatcgcaaatgtcgcatctgtttttcctcctatggcctctggtgaccttctagtg
ggtgaactagcaactacaactaaagatataggtgctgcaatacagccttcgcccactgtt
gctattaatcgtctaggatctgcctttccggaactactgaatactggtgatgcactggag
agatatcagcatgtttggcagaagctggaagccttgattgcgaataatgggaaagatggg
gaaattcagtccattatcgcggaagttcctgatatcttgttcagatgtgtcagtcgggac
gaagctgctttagcagttgcacagaaggttttcagaagtttgtatgaaaatgcgtcaaag
aacacttttgtcacatggcttctagcaacccttgttgcagtgcgtgatgtttgcaaactt
gttgtgaaagagttaacgagctgggtaatatattcagatgaggagaagaagtttaacatg
gacataattgttggacttattcgttctgatctgcttaatcttggggagtacaatgttcat
ttggcaaagcttatagatggtggaagaaataagactgcaacagaatttgctatatcactc
atccagacactggttacccaagattccagtagcgtctccgagctttttaatgttgttgat
gtcttatcgaagcttgcaacgaggcctgggtcacctgattcattgcagcacttgattgaa
attgcaaggagtaccttcaacaacactgctaattatgctgctgcaaaggatgaaaaggtt
attcagtcaagagataaaaaggtactatctgttcgtcctttgatgaataacgaagaagat
aatgctgatggcattgcttttgctaatgctgctgattttcaggacaaggttgcggtcttg
ttttccgagtggtgtcaaatatgtgatcatcccgctatgggtgattcagtatataataat
tacattgtgcagttgcaacagaatggcttgctgaagggagatgatgtgactgaccgtttt
ttcattagtctgacggaacttgctatcgcacactctcttgtgtctgaccaaaccattgct
cctagtggactatctcagcaatcatcccagcaacagcagatttcatatttttcaattgat
tcatattcaaaacttgtgacttcagttgtcaagcagtcagtggatttaggaccaaataaa
ggcagtcttctccacaagatacttgctgtgacagctaggataattcagaaagatgctgaa
gaaaagaaagtctctttcaatcctcggccgtattttcgtttgtttataaattggctaagt
gagcttactacttctgaccttcaccatgacagtgctaattttcagattttgactgcattt
gcaaatgcattccatattctgcaacccttgagagttcctgcttggagttttgcttggctt
gagttggtgagccaccgatgcttcatgccaaagttattgatgtgtaatttgcaaaaaggc
tggccgtttttccagaggttgcttgttgatttgttcaaattcatggaaccatacttaaga
aatgctgaactgggacaacctattctccttttgtacaaaggaaccttaagagttctgctt
gtgctattgcatgatttccctgaatttctttgtgactatcacttcagtttctgtgatgtg
attcccccaagctgcattcaaatgcgcaatgttattcttagtgcttttccacgcaatatg
agacttccagatccctccactcctaacttaaagattgatctgttagcggagatttcaata
gctcctcgaatcatgactgatgtggatgctgccttgaaggcaaagcaaatgaaggctcag
gttgatgaatacctaaagagaccagaaggctccctctttttaactgatctaaagcagaag
ttgttgctaccacaaaacgaggcaaatgttgcagggactcgttacaatgttcctctagtt
aattcacttgtcctttacgttggcatgcaggctgtgcaacagttgcagcaaaacaaggcc
aatgcttcagcatcagcccaaattaaccaaagtcctcagatggatatattccagattgaa
acagctactgagatgttcagaaaccttgtaatgactatggatacagaaggtcgctacctt
attctcaatgcaattgctaaccagcttcgctatccaaatagccatacccactacttttct
ttcatcattctgtacttgtttgctgaggcaacccaggaaattgtccaggagcagataact
agggttcttttggaaaggttaattgtcaaccgtcctcatccttggggattactcattact
ttcattgagctgataaagaacccacgctacagcttctggaccagatcctttacacactgt
gcgcccgagatagagaagctgttcgagtcagttgcaaggtcgtgtggagggaaaggtgct
gatgacggaattggtctcggagatggtggccactag
DBGET
integrated database retrieval system
