Setaria viridis (green foxtail): 117845401
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Entry
117845401 CDS
T07951
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
117845401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117845401
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
117845401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
SMC_Nse1
Motif
Other DBs
NCBI-GeneID:
117845401
NCBI-ProteinID:
XP_034582324
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Position
1:12349830..12352343
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AA seq
710 aa
AA seq
DB search
MPRSTVSSSFAGHRTPAAEAEMGSNPSSSAAAAAESSMASLIERATSTTAPAVDPVLLRA
IKSSARASDGAIRDAFHLLLSLMSKPHSHVRLLAFSVADELFMRSKLFRSLLTDALDGFL
PLAVGFRRAHPLPPPAASAGLLRKAAVQALERWHHLFGAHYRQLRLAVEYLKVSARVQFP
GLRATVEARAAREARTQEILTAKVEQLRQSLASIKAEIRSTMDEIRNGLEIIRAEYEKFE
GYVNDDDDAEQEIASLSMRSIRMASLMAGEWLPETQENEAVFDALREAYRLLVSKHLVTV
QEWISVLVRVNLQDNRFRDSALKEFIDVKNEIRAVRDQCSELGLDLDNVRRRKGDQEEED
DEFWVEGNIEAPSPAKVQSSVDVASTSRDTGKGKKVVGGVKSDIGKAPVAGNGTRNLDPE
KSKLFAEAPVVQWSSVLDRWGSSGDAHVNQRGLELESHWGRVDNDAVIPAAKIAELNVHS
SVYREAPVEILPCHAPLKKGGLCQRRDLKVCPFHGSIVPRDAEGNPFEQHSGSFGAEVDP
VEHCDIRGNSNELNGNRDGDYMEEASSSRMTDISNDYGNIAGTHDLGNVTVELARQAIKN
VRKRDMDHKARERAQRQRIRQHNEDVLREAAIASTSYSAAAYEQPPESWGRRGRRGKAKA
PTLASMLKKKVTSKDRIAERLLNTRATDATIREASHNEDMSYREAFPNQW
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgatcgacagtctcctcctccttcgccggccaccgcactccggcggccgaagca
gagatgggctcgaacccctcctcctccgctgccgcggcggcggagtcctccatggcgtcc
ctcatcgagcgcgccacctccaccaccgcgcccgccgtcgacccggtcctcctccgcgcc
atcaagtcctcggcccgcgcctccgacggcgccatccgcgacgccttccacctcctcctc
tccctcatgtccaagccccactcccacgtgcggcttcttgccttcagcgtcgccgacgag
ctcttcatgcgctccaagctcttccgctccctcctgaccgacgcgctcgacggcttcctc
ccgctcgccgtagggttccgtcgggcgcacccgctcccgccgccggccgcctcggcgggg
ctcctccggaaggccgccgtccaagcactcgagcgctggcaccacctcttcggcgcgcac
taccgccagctccgcctggccgtcgagtacctcaaggtgtccgcccgcgtccagttcccg
ggcctacgggccaccgttgaggctcgagcagcccgcgaggcacgcacgcaggagatcctg
accgccaaggttgagcaattgcgtcaaagcctcgcttcaatcaaggctgaaatccggtcc
acgatggatgagattcgcaatgggttggagatcatccgtgctgaatatgaaaaatttgag
ggctatgtgaatgatgatgatgatgcagagcaggagattgcatccctgtcaatgcggagt
attagaatggcttcattgatggctggggagtggttgcctgagactcaggagaacgaagca
gtttttgatgccctgagggaagcgtaccggctgcttgtgtcaaagcatctggtaactgtc
caggagtggatatctgttcttgtaagggtcaatcttcaagataaccggttcagagattct
gcactgaaggagttcattgatgttaagaatgagatacgggcagtgagagatcagtgcagt
gagcttggactcgaccttgacaatgttcgtaggaggaagggtgaccaagaggaagaggat
gatgagttttgggtggagggaaacatagaggcccctagtcctgccaaagtccagagcagt
gtagatgttgcaagcaccagccgggacaccggaaagggaaagaaggtggtgggtggagtg
aaatctgatattggcaaggcgccagttgctggtaatggaactaggaatcttgacccagag
aaatcaaagctctttgctgaagcccctgtggtgcaatggagctctgtcttggatcgttgg
ggctccagcggggatgcacatgtaaaccagagagggcttgagctcgagagtcattgggga
agggtggataatgatgccgttatacctgcagcaaaaattgcagagttgaatgttcatagc
tcagtttatagagaagccccagttgagatcctaccatgtcatgccccactaaagaaagga
gggctttgccagagaagggatcttaaggtctgtccttttcatggatcaattgtcccacgt
gatgctgaaggaaatccatttgagcagcacagcggtagttttggtgctgaagtagatcct
gttgagcactgtgatataagaggaaactcaaatgagctgaatggaaacagagatggtgat
tatatggaggaggcctcttcttcaagaatgacagacataagtaatgactatggaaatatt
gctggaactcatgatctaggtaacgttactgtagagctggcaagacaggcaattaaaaat
gtccggaaaagagatatggatcataaggcccgggaaagagcacaacgccagagaatccgt
cagcacaatgaagacgttctgcgggaggcagctattgcttcaacttcctactctgcagca
gcctatgagcagcctccagaatcatggggtcgacggggtcgccgaggtaaggcaaaagca
ccaacgctggcatcaatgctgaagaagaaagttaccagcaaggatagaattgcagagagg
cttctgaacactcgagccacagatgcgacaataagagaggcttctcataatgaagatatg
agctacagggaagcatttccaaaccagtggtaa
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