Setaria viridis (green foxtail): 117848880
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Entry
117848880 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K12869
crooked neck
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117848880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117848880
03036 Chromosome and associated proteins [BR:
svs03036
]
117848880
Spliceosome [BR:
svs03041
]
Complex B
Other components
Prp19-related factors
117848880
Complex C
117848880
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
117848880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_14
Suf
HAT
TPR_19
TPR_16
TPR_CcmH_CycH
TPR_17
HAT_Syf1_M
TPR_2
TPR_9
Mad3_BUB1_I
U3_assoc_6
TPR_12
Motif
Other DBs
NCBI-GeneID:
117848880
NCBI-ProteinID:
XP_034586350
LinkDB
All DBs
Position
3:19406948..19412077
Genome browser
AA seq
721 aa
AA seq
DB search
MALTTRGGGAGGGDPAKAPSASDPSLGFLTKRDTEVKLPRATRVKNKTPAPVQITAEQIL
REARERQEPEIRPPKQKITDTHELAEYRLRKRKEFEDVIRRVRWSVSAWVKYARWEEQQR
DFARARSVYERALDVAHRDHTLWLKYAEFEMRNRFVNHARNVWDRAVSLLPRVDQLWYKY
IHMEELLGAVANARQVFERWMAWRPDTAGWNSYIKFELRYGEVERARAIYERFVAEHPRP
DTFIRYAKFEMKRGEVERARRVYERAADLLADDEDAEVLFVAFAEFEERCREVERARAIY
KHALDRVPKGRAEELYRKFLAFEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFD
YIRLEESVGNKDRIREVYERAIANVPPAEEKRYWQRYIFLWINYALYEELDAQDMERTRE
VYKECLKLIPHKKFTFAKIWLMAAQFEIRQRNLKAARQILGNAIGMAPKGKIFKKYIEIE
LYLGNFDRCRTLYEKYIEWSPANCYAWRKYAELEKNLSETDRARSIYELAIAQPALDTPE
VLWKEYLQFEIDESEFGRARDLYERLLERTKHLKVWISFAEFEASAGLGSEDSESEEKKS
EVGYQEQQMERVSKCRAIFERAFDYFRTSAPELKEERAMLLEEWLSKELSFGDLGDVSLV
QKKAPRKVKRKRPIPTEDGSTIAYEEYIDYIFPDEVAQAPNLKILEAAYKWKKQKTGDDD
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcactacacgcggcggcggcgccggcggcggggatcccgcgaaggcgccgtcc
gcctccgaccccagcctcggcttcctcaccaagcgcgacaccgaggtcaagctgccccgc
gccacgcgggtcaagaacaagacccccgcgccggtccagatcacggcggagcagatcctc
cgggaggcccgggagcggcaggagcccgagatacgcccgcccaagcagaagatcacagac
acccacgagctcgccgagtaccgcctccgcaagcggaaggagttcgaggacgtcatccgc
cgcgtgcggtggagcgtctcggcgtgggtcaagtacgcgcggtgggaggagcagcagcgg
gacttcgcgcgcgcgcggtccgtctacgagcgcgcgctcgacgtcgcccaccgcgaccac
acgctctggctcaagtatgccgagttcgagatgcggaaccggttcgtcaaccacgccagg
aacgtctgggaccgtgcggtgtcgctcctcccgcgggtcgaccagctatggtacaagtac
atccacatggaggagctgcttggcgcggttgccaatgcgcgccaggtgtttgagcgctgg
atggcgtggcgacctgacacagctgggtggaattcttacatcaagtttgagctgcgttat
ggggaggtcgagcgcgccagggctatctatgagcggtttgtagctgagcatccacggcca
gacactttcatccgctatgctaagtttgagatgaagcgtggtgaagtagagcgggcacga
cgggtatatgagcgtgcggcggacctgcttgcggacgatgaggatgcagaggtgctgttt
gtggcatttgcagagtttgaggagaggtgccgggaggttgagcgtgcacgtgctatatac
aaacatgcgctggacagggtaccgaagggtcgggctgaggaactgtacaggaagtttctg
gcatttgagaagcaatttggtgaccgtgaggggatcgaggatgccattgtggggaagagg
agatttcagtatgaggatgaggtgaggaagaacccactaaactatgactcatggtttgat
tacatccgcctggaggagagtgttgggaataaggacaggatcagggaggtttatgagagg
gccattgctaatgtgccccctgcagaggagaagcggtattggcagaggtatatattcctc
tggattaactatgcactttatgaggagcttgatgcacaagacatggaacggaccagggag
gtttacaaggaatgcctgaagttgattccacacaagaagttcacgttcgcaaagatatgg
ctcatggcagcccagtttgagataagacagagaaatctaaaggctgctcgacaaattctt
ggaaatgcaattggaatggccccgaagggcaagatatttaagaaatatattgaaatcgag
ctgtatcttggaaactttgaccgttgtaggactctttacgagaaatacattgaatggtcc
ccagcaaactgttatgcctggagaaagtatgctgaattggagaagaaccttagtgagact
gatcgtgctcgatcaatatacgaacttgctattgcacagccagcccttgatacgccagag
gttctgtggaaggagtacctgcaatttgaaattgatgaaagtgaatttggtagggcaagg
gatctatatgaaagactgcttgagagaacaaagcatttgaaggtatggatcagttttgct
gagttcgaggcctcagctggcttgggcagtgaagacagcgaaagtgaggagaaaaagagt
gaagttggttatcaggagcagcagatggagcgggttagcaaatgtagagctatctttgaa
agggcattcgactacttcagaaccagtgccccagagttgaaggaggaaagagctatgctt
cttgaagaatggcttagtaaggagttgagcttcggtgatcttggtgatgtcagcttagtg
cagaagaaggctccaagaaaagtcaagcggaagagaccaatccctacggaagatggatcc
accatagcgtatgaggagtatatagattacattttccctgatgaagttgctcaagcacca
aacctgaagatcctagaagctgcttacaaatggaagaagcagaaaactggcgatgatgat
gagtga
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integrated database retrieval system
