Setaria viridis (green foxtail): 117848964
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Entry
117848964 CDS
T07951
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117848964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117848964
03009 Ribosome biogenesis [BR:
svs03009
]
117848964
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117848964
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117848964
Pre-60S particles
117848964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IPO5
IBN_N
TPR_IMB1
HEAT_2
TPR_DNAAF5
TOR1L1_N
HEAT_MROH2B_C
PDS5
HEAT_EF3_N
CEP104-like_TOG
CLASP_N
INTS7_N
UME
UTP20_N
Adaptin_N
Ltn1_1st
Xpo1
KNOX2
Usg
Motif
Other DBs
NCBI-GeneID:
117848964
NCBI-ProteinID:
XP_034586455
LinkDB
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Position
3:complement(212338..223579)
Genome browser
AA seq
890 aa
AA seq
DB search
MAAPALWQPQEQGLREICTLLEAHISPNSDQARIWQQLQHYSQFPDFNNYLVFLLARGEG
KSVEVRQAAGLLLKNNLRTTFSSMPPPSQQYIKAELLPCIGATNRAIRSTVGTVISVLFQ
IVRVAGWIELFQALHKCLDSNDLDHMEGAMDAIYKICEDVPEELDVDVPGLPERPINVFM
PRILQFFQSPHASLRKLALGCINQYIVVMPSALYMSMDQYLQGLFNLAKDPSADVRKLVC
SAWVQLIEVRPSILEPHLKHVTELILQANKDSDDEVALEACEFWSAYCDVSMPPEGLREF
LPQLIPTLLSNMVYADDDESLADAEEDESFPDRDQDLKPRFHASRLHGSETGEDDDDDDA
VNVWNLRKCSAAGLDVLSNVFGDSILPTLMPLIEQNLARTDDDSWKERETAVLSLGAIAE
GCIDGLYPHLPQIVAFLIPLLDDKFPLIRSITCWTLSRYSKFIVQSLDHPNGREQFDKIL
LGLLRRILDTNKRVQEAACSAFATLEEEAAEELVPHLEVILQHLMCAYGKYQRRNLRILY
DALGTLADAVGAELNQAKYLDIFMPPLIMKWQQLQNSDKDLFPLLECFTSIAQALGSGFA
QFAEPVFQRCINLIQSQQLAKIDPTAAGALYDREFIVCSLDLLSGLAEGLGAGIESLVAQ
SNLRDLLLQCCMDEAADVRQSALALLGDLSRVCPIHLQPRLQEFLTVAAKQLNPQSVKDA
VSVANNACWAIGELAIKIGKEIEPVVISVVTCLIPILKSPEGLNKSLIENSAITLGRLSW
VCPDIMAPHMDHFMQAWCRALCMIRDDFEKEDAFHGLCAMVAANPSGAVGSLAYICQACA
SWTEIKSEGLHNEVCQILYGYKQLLGNGGWEQCMATLEPAVVQRLARYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccggcgctgtggcagccgcaggagcaggggctccgcgagatctgcacccta
ctcgaggcgcacatctcccccaactccgaccaagctcgcatctggcagcagctccagcac
tacagccagttccccgacttcaacaactacctcgtcttcctcctcgcccgcggagagggg
aaatccgttgaagttaggcaggctgcaggccttctactgaaaaacaacctgcgaacgact
ttcagttccatgccacccccatcccagcagtacattaaggctgagctgctaccatgtata
ggggcaaccaatagggcaattagatcgacggttggaacagtgatcagcgtacttttccaa
attgttcgagttgctgggtggattgagttgtttcaggccctgcacaagtgtttggacagt
aacgacctggatcatatggaaggtgctatggatgccatatacaagatctgtgaggatgta
cctgaagagcttgatgtcgatgttcctggtttgcctgaacggccgatcaatgtattcatg
ccaaggatactgcagttttttcagtctccacatgcaagtcttagaaaactagcattgggc
tgcatcaaccagtacattgtggtgatgccatcggcactttatatgtccatggatcagtat
cttcagggattattcaaccttgcaaaggacccttcagcagatgttcggaaactggtttgt
tcagcttgggttcagctcattgaagtgcggccatcaattttggagccacatctaaaacat
gttaccgaattgatcctacaagccaataaagattcagatgacgaagtcgctttggaggct
tgtgaattctggtctgcgtactgtgacgtcagcatgcctcctgaaggtttacgggaattc
ttaccacaattaatcccgacattgttgtcgaacatggtatatgctgatgacgacgagtca
cttgctgatgctgaggaagatgaatcatttccagacagggaccaggatttgaagccccgc
ttccatgcctctcgattgcatggatcggaaactggagaagacgatgatgatgatgatgct
gtaaatgtctggaacttgcggaagtgtagtgctgctgggctggatgtcctctctaatgtg
tttggtgacagcatccttccaactttaatgcctttgattgagcaaaatttggctcgaaca
gatgatgattcttggaaagaaagggaaactgctgttttatctcttggtgctatagcagag
gggtgcattgatggtttatatccccaccttcctcagattgttgccttcctgatcccactt
cttgatgataaatttcctcttatacggagtattacatgttggaccctgtctcgatacagc
aaatttattgttcagagccttgatcatccaaatgggcgtgaacaattcgataaaattctc
ttgggattgctcagaaggatattggatactaacaaaagagtgcaagaggctgcttgttcg
gcatttgcaactcttgaagaggaagctgcagaagaattagtaccacacttggaagtaatt
ttgcagcacctcatgtgtgcctatggaaaataccagagacgaaacctccggatactctat
gatgctcttggtactcttgctgatgctgttggagcagaactaaatcaggcgaaatatcta
gatatatttatgccgcctttaatcatgaagtggcagcaactccaaaattctgacaaagat
ctatttccgctccttgaatgctttacatctattgcacaggcattgggatcaggatttgct
cagtttgcagaaccagtgtttcaaaggtgcatcaatcttatccaatcccaacagttggca
aagattgatcccactgcagctggtgcgttgtatgatagagaattcattgtttgctcattg
gacctactgtcaggactcgcggaaggtcttggtgctggtatcgaaagtcttgttgcacag
agcaatttgagagatctacttttgcaatgctgcatggatgaggcagctgatgttcgacaa
agtgctcttgcccttcttggagacctttctagggtttgcccaatacacttgcagccacgc
cttcaagaattccttactgttgcagctaagcaactgaaccctcaatccgtgaaggatgct
gtctcagtagctaacaatgcttgttgggctattggtgaattggcaatcaagattggcaaa
gaaatcgaacctgtggtgatctcagttgttacttgtttgattcccattctaaaatctcca
gaggggttgaacaagtcacttattgaaaatagtgcaatcactcttgggaggcttagctgg
gtctgtccagacatcatggcccctcatatggaccatttcatgcaagcgtggtgccgtgcc
ttgtgcatgattagagatgattttgagaaagaggatgcttttcatggcctgtgcgcaatg
gtggcagcaaacccttcaggagctgtgggttcactggcttacatctgccaggcctgtgca
agttggactgagataaaaagtgaaggtcttcacaacgaggtgtgccagattctatatggc
tacaagcagctgcttggaaacggtgggtgggagcagtgcatggccaccctagaaccagca
gttgtgcagagattagctcgatatggagtatga
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