Setaria viridis (green foxtail): 117852031
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Entry
117852031 CDS
T07951
Name
(RefSeq) protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5
KO
K12199
vacuolar protein sorting-associated protein VTA1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117852031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117852031
Membrane trafficking [BR:
svs04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
117852031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vta1
Vta1_C
Motif
Other DBs
NCBI-GeneID:
117852031
NCBI-ProteinID:
XP_034589841
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All DBs
Position
4:15147261..15152128
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AA seq
485 aa
AA seq
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MGSDAEPAKGLLPYLQRADELQKHEPLVAYYCRLYAMEKGLRIPQKERTKTTNSILISLM
NQLEKDKKTLTLGPDDNLHLEGFALNVFAKADKQDRAGRADINTAKTFYAASIFFEILNQ
FGELQPDIEQKQKYAIWKAAEIRKALKEGRKPEAGPPGGDKDETPVSTTTISQDMGRSQS
FNSMQHGTEAPSPPVDKDFSRRDSFSALQPGNNVHRQNTEFNDHPSTQSPYNYSPPAPSQ
PQHPSPSQSYSSPSYQATDYPSSDSHKQNPNHSSPPYTSTDYPTNEVHKPPSNYSPPPYT
RTDYPSNDGYNPHSNDKPDVSPYPQTYQPPPYTIEPQHTSQNFYSTEAPAAPYNYPNFQS
YPSFQDSTSPSVPTHQSPSVPTHQSSFYSASDGPAATSYSPASNPSAPTHYHSTADSSPQ
VTPAVPPASQYKYDSTYQPAVEKIAEAHKAARFAVGALAFDDVSVAVDHLKRALDLLTNP
SAETH
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgacgcggagcccgccaaggggctgctgccatacctgcagcgcgccgacgag
ctgcagaagcacgagcccctcgtcgcctactactgtcggctctacgcgatggagaagggg
ctgaggatcccgcagaaggagcgcaccaagaccaccaactccatcctcatctccctcatg
aaccagctcgagaaggacaagaaaaccttgactttggggccagacgacaaccttcatttg
gagggatttgcattaaatgtttttgctaaagcagataaacaggaccgtgctggacgagct
gacataaacacagctaagaccttctatgctgcgagcatcttcttcgagattcttaaccag
tttggcgagcttcaacctgatattgagcagaagcagaaatatgccatctggaaggctgct
gaaataaggaaagctctcaaagagggacggaagcctgaagctggccctcctggtggggat
aaggatgaaacacctgtcagtaccaccacaatttctcaggatatggggcgaagccagtcc
ttcaacagtatgcagcatggcactgaagcaccatctccacctgtagacaaggattttagt
aggcgggatagcttttctgctctgcagccaggaaataatgtgcatcgacaaaatacagag
ttcaatgatcatccctctacccagtcaccctataactattcacccccagcaccctcacaa
ccccagcatccttctccgtcacaatcttattcctctccctcgtaccaagcaacagactat
ccttcttctgattcccacaaacaaaaccccaatcattcatctcctccctacacaagcaca
gactaccctaccaatgaggtccacaaaccaccatccaattattcaccacccccttacacc
aggacagactacccttccaatgatggctacaatcctcatagcaatgataaaccagatgtt
tcgccatatcctcagacataccaacccccaccctacacaattgaacctcagcacacctct
caaaacttttactccactgaagccccagctgccccatacaactaccctaatttccagtca
tatccaagtttccaggacagcacgtcgccttctgtcccaacacatcaatcaccttcagtc
ccaacacaccaatcttcattctacagtgcaagtgatggccctgcagctacatcatactcc
cctgcgtcaaatccctctgccccaacacattaccactctactgctgactcttcaccccaa
gttactccagctgtgccaccagctagccaatataagtatgatagcacttaccagccagca
gttgagaagatagccgaggcacacaaggcagcaagatttgcggttggtgctcttgcattc
gatgacgtttctgttgccgtggatcacctgaaacgcgcgctggatcttctcacaaaccct
tctgctgaaactcattag
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