Setaria viridis (green foxtail): 117853279
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Entry
117853279 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K12869
crooked neck
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117853279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117853279
03036 Chromosome and associated proteins [BR:
svs03036
]
117853279
Spliceosome [BR:
svs03041
]
Complex B
Other components
Prp19-related factors
117853279
Complex C
117853279
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
117853279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_14
Suf
TPR_19
HAT
TPR_16
TPR_2
TPR_15
TPR_12
TPR_17
U3_assoc_6
BSD
NRDE-2
UTP6_C
Wzy_C_2
TPR_EMC2
NifW
Motif
Other DBs
NCBI-GeneID:
117853279
NCBI-ProteinID:
XP_034591560
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All DBs
Position
4:25710590..25713346
Genome browser
AA seq
698 aa
AA seq
DB search
MALPAASDPGLGSLTSRDTGTRLPRATRVKNKGPAPVQITAEHLLREARELRGSEHPRAP
ARKIADAEELAERRLMERKFFEHSVGRAGASASAWAKYAQWEERQGDLARARSVFERALA
ASASASRDHSLWVKYAELEMRRGCVGDARNVWDRAVALLPRADQVWRKYVHMEETLGEVA
NARQVFDRWMAWWPGATAWCSYARFELRYGEVGRARAVYERFVAEYPRADAFMRYAGFEE
KRGELERARRVFERAADVLADDEEEAGTLLVAFGEFEEEFREVERARAIYQYALDRVPKR
RAEQIYGKLLAWEKQFGDPKGIEDAIVARRRLECQDDVRKNPLNYNSLFELIRLEESVGD
KERIREAYERAVAKVPPAEEKRFWRRYIYIWINYALYEELDAQDAERAREVYRECLNLIP
HKRFTFAKIWLMAAQFEIRQRNLSAARRILGNSIGVAPKPKVFNKYIEMEVSLGNFDRVR
TLYQKFIECYAANSYAWRKYADLEKNLGESDRARAVYELAIAQPTLDNPELIWKEYLEFE
IDGNEFDRARKLYERLLGRTKHLKVWLSYAEFEATAGSCGEDSTNRQMERAQRCRGVFQR
AFDHFRTSSPESKEERAMLLEEWLNREVSFGHLGDVSVVQTKVPTKVKRKRSIPSEDGST
FVCEEFIDYIFPEEITHAPNMKIIEVAYRWKRQKTDDE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcgctccccgccgcctccgaccccggcctcgggtccctcaccagccgcgacaccggg
acgaggcttccccgggcgacgcgcgtcaagaacaagggccccgcgccggtacagatcacc
gcggagcacctcctccgggaggcccgggagctgcgggggtcggagcacccgcgcgcgccc
gcgcggaagatcgccgacgcggaggagctcgccgagcgccgcctgatggagcgcaagttc
ttcgagcactccgtcggccgcgccggcgcctccgcctcggcgtgggccaagtacgcgcag
tgggaggagcggcagggagacctcgcccgcgcgcggtccgtcttcgagcgcgcgctcgcc
gcctccgcatccgcctcccgcgaccactcgctctgggtcaagtacgcggagctcgagatg
cggaggggatgcgtcggcgacgcgcgcaacgtctgggaccgcgcggtggcgctgctgccc
cgcgccgaccaggtgtggcgcaagtacgtgcacatggaggagacgctcggcgaggtcgcc
aatgcccgccaggtgttcgaccggtggatggcgtggtggcccggcgccacggcgtggtgc
tcctacgccaggttcgagctccggtacggcgaggtgggccgcgccagggcggtctacgag
cgcttcgtcgccgagtacccgcgcgcggacgcgttcatgcggtacgccggattcgaggag
aagcgcggcgagttggagcgcgcgcggcgggtgttcgagcgcgccgcggacgttctcgcc
gatgatgaggaggaggcggggacgctgctcgtggccttcggcgagttcgaggaggagttc
cgcgaggtggagcgcgcccgtgccatataccagtacgcgctcgacagggtgcccaagcgc
cgtgccgagcagatttacgggaagctgctggcatgggagaagcaattcggggaccccaag
ggaattgaggatgccattgtggccaggaggagattagagtgtcaggatgacgtgaggaag
aatcctctcaactacaattctttgtttgaactcatccggcttgaggaaagtgtcggagac
aaggagaggatcagagaggcatacgaaagggcagttgccaaagtgcctcctgctgaggag
aagcggttctggcgcagatacatatacatctggataaattatgccctgtatgaggagctt
gatgcgcaggatgctgaacgggccagggaggtctacagggaatgcctgaacctaatccct
cacaaaagattcacttttgcaaaaatttggctgatggcagcccagtttgagatcaggcag
aggaatttaagcgcagcaaggcgaatacttggaaattcaattggggttgctccaaagcct
aaggtgtttaataaatacattgagatggaggtatctctgggcaactttgaccgtgtgaga
acactttaccagaaattcatcgagtgttatgcagcaaactcttatgcttggagaaagtac
gctgacctggaaaagaaccttggtgagtctgatcgtgctcgagcagtatatgagcttgca
attgctcagccaacccttgacaatccagagctcatatggaaggagtacttggagtttgaa
attgatggaaatgaatttgatagagcgaggaagctttatgagagattgcttggtagaacg
aagcatttgaaagtatggctcagctatgctgagtttgaagccacagctggctcatgtggt
gaagacagtacaaatcgacagatggagcgggcacaaagatgcagaggtgtttttcagagg
gcgtttgaccacttcaggaccagctcccccgaatcaaaggaggaaagagcaatgctcctt
gaagaatggcttaacagggaggtgagctttggtcaccttggtgatgtgagcgtagtgcag
acaaaggtgccaacaaaagttaaaaggaagcgatcaatcccttcggaggatggctccacc
tttgtatgtgaggagttcatcgattatatattccctgaggaaatcactcatgctccaaac
atgaagatcatcgaagttgcatatagatggaagaggcagaaaactgatgatgagtga
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