Setaria viridis (green foxtail): 117856164
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Entry
117856164 CDS
T07951
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117856164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117856164
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117856164
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
117856164
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
zf-TRAF_2
zf-C3HC4
DM
Motif
Other DBs
NCBI-GeneID:
117856164
NCBI-ProteinID:
XP_034594485
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Position
5:6594015..6595504
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AA seq
259 aa
AA seq
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MDNEPQVILRMSVTLFHGEACLRPLKPPTFKCEAGHRVCGTCRDSHSKDAKLPCAHREFG
CESYVVYHEEADHLRACPWAPCSCPDQGCPFFSSPARLLEHLGAHHPWPVTAVSYGKPCK
LPVPPPQGWHILVAGEEEEDRRVFLVAASVLGAATAVSVVCVRANGDAAAGAPQFECVLW
VEGPVHNRAYTTISSTVRSSNLSRGFAAADQGMFLAVPPQLLHGASGETPVLTVRINRAV
LMQQSPALKHHSNTNLVFG
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgagcctcaggtcatcttgaggatgtcggtcaccttgttccacggcgaagct
tgcctccgtcccctgaaacctcccacgttcaagtgtgaggccgggcaccgcgtgtgcggc
acctgccgcgacagtcacagcaaggacgccaagctgccgtgcgcgcacagggagttcggg
tgcgagagctacgtcgtctaccacgaggaggcggaccacctccgcgcgtgcccatgggcg
ccctgctcgtgcccggaccagggctgccccttcttcagctcgccggcgcggctgctcgag
cacctgggcgcccaccacccctggccggtcaccgccgtgagctacgggaagccgtgcaag
ctgccggtgccgccgccgcagggctggcacatcctcgtggccggtgaggaagaggaggac
cggcgcgtgttcctcgtggccgcgtccgtgctcggcgcggccacggcggtgtccgtggtg
tgcgtgagggcgaacggcgacgcggcggcgggggcgccgcagttcgaatgcgtgctctgg
gtggagggccccgtgcacaaccgggcgtacacgacgataagttccacggtgaggagcagc
aacctgtctcgcggtttcgcggcggcggaccagggcatgttcctggcggtgccgccgcag
ttgctccacggcgcttccggcgagacgcccgtcctcacggttcgcatcaacagagctgtg
ctgatgcagcagagcccagcactcaaacaccattcaaacaccaatctagtgtttggttga
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