KEGG   Streptomyces violaceoruber: B1H20_25940
Entry
B1H20_25940       CDS       T05124                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
svu  Streptomyces violaceoruber
Pathway
svu03030  DNA replication
svu03410  Base excision repair
svu03420  Nucleotide excision repair
svu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:svu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B1H20_25940
   03410 Base excision repair
    B1H20_25940
   03420 Nucleotide excision repair
    B1H20_25940
   03430 Mismatch repair
    B1H20_25940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svu03032]
    B1H20_25940
   03400 DNA repair and recombination proteins [BR:svu03400]
    B1H20_25940
Enzymes [BR:svu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B1H20_25940
DNA replication proteins [BR:svu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B1H20_25940
DNA repair and recombination proteins [BR:svu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B1H20_25940
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B1H20_25940
   MMR (mismatch excision repair)
    DNA ligase
     B1H20_25940
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B1H20_25940
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH zf-TFIIB zf-IS66
Other DBs
NCBI-ProteinID: ARF66395
UniProt: A0A1V0UM98
LinkDB
Position
5919020..5921287
AA seq 755 aa
MAGEERVEQDSSVPAEAREKHALLAEQIEEHRFRYYVKDQPVVSDGEFDRLLRSLEALEE
EHPALRTPDSPTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAREAGTPDH
HFLCELKIDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALV
EIRGEVFFPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG
AHEGLSIDRLSQAYDLLHAWGLPTARHNKVVDSLAGVREFIAYFGEHRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQNVVRAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGTEKAFEMPTHCP
ECGTELRPMKEGDIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALTRPLEP
AEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEPKKNA
VAMLEGIAAAKEAPLARVLTGLSIRHVGPVAAQELARQFRSIDRIDEASEQELADADGVG
PIIAASVKQWFAEDWHREILRKWREAGVRMADEGSDEDEGPRPLEGLTVVVTGTLAGHTR
DGAKAALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEDGFAILLEHGPE
RAQEAALPVPEAAPEPAPDGDGKSGGENSAEDSGE
NT seq 2268 nt   +upstreamnt  +downstreamnt
atggccggcgaagagcgggtggagcaggacagttcggtaccggcggaggcgcgggagaag
cacgcgctgctggccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccag
ccggtcgtcagcgacggcgagttcgaccggctgctccgctcgctggaggccctggaggag
gagcacccggcgctgcgcacccccgactcgccgacccagaaggtcgccgggccctaccgc
acggagttcacctccgtggagcaccgcgagcggatgctctccctggacaacgccttcgac
gacgaggagctggccgcctgggccgaccgggtggccagggaggccggcacgcccgaccac
cacttcctgtgcgagctgaagatcgacggcctcgcggtcaacctcacgtacgagaacggc
cgcctcacccgggcggccacccgaggcgacggccgtaccggcgaggacatcacccccaac
gtccggacgatcgccgagatcccgcaccgcctgaagggcgaggacatcccggcgctggtc
gagatccgcggcgaggtcttcttccccatggaggacttcgaggagctgaacgcccggctg
gtcgcggccgacgacaagcccttcgccaacccgcgcaacgcggcggccggatcgctgcgg
cagaaggacccgaaggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggc
gcccacgagggcctgagcatcgaccggctctcgcaggcgtacgacctgctgcacgcctgg
ggcctgcccaccgcccggcacaacaaggtcgtcgactccctcgcgggcgtacgggagttc
atcgcgtacttcggcgagcaccggcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatcccgctccagggccggctgggctccacctcgcgcgccccgcgctgg
gccatcgcctggaagtacgcccccgaggaggtcaacaccaagctcgtcaacatccgcgtc
ggcgtcggccgcaccggccgcgtcaccccgtacgcccaggtcgagccggtcgaagtggcc
ggttccgaggtcgagttcgccaccctgcacaaccagaacgtggtcagggccaagggcgtc
ctgatcggcgacaccgtggtcatccgcaaggcgggcgacgtcatcccggagatcctcggg
cccgtcgtcgacctgcgcgacggcaccgagaaggcgttcgagatgccgacgcactgcccc
gagtgcgggacggagctgcgcccgatgaaggagggcgacatcgacctccgctgccccaac
gcccgtacctgtcctgcccagttgcgcgagcgggtcttctacctggccgggcgcaagagc
ctcgacatcgaccacttcggctatgtggccgccgcggccctgacccggccgctggagccc
gccgagccggtcctcaaggacgagagcgacctcttctcgctcaccgtcgagcagttgctg
ccgatccgggcgtacgtgctggaccaggacagcgggctgcccaagcgcgacccgaagacc
ggcgaggagaagatcgccacggtcttcgccaaccagcagggcgagccgaagaagaacgcc
gtggccatgctggagggcatcgccgccgccaaggaggccccgctcgcccgcgtcctcacc
gggctctccatccgccatgtcggaccggtcgccgcccaggagctggcccgtcagttccgt
tccatcgaccggatcgacgaggcgagcgagcaggagctggccgacgccgacggggtcggg
ccgatcatcgccgcctccgtcaagcagtggttcgccgaggactggcaccgcgagatcctg
cgcaagtggcgcgaggccggggtgcggatggccgacgagggctccgacgaggacgagggg
ccccgccccctcgaagggctcaccgtcgtcgtcacgggcaccctggccggccacacccgc
gacggcgccaaggcggcgctccagaccctcggcgccaaggtcaccggatcggtgtcgaag
aagaccgcgttcgtggtcgtcggcgacaaccccggctccaagtacgacaaggcgatgcag
ctcaaggtccccgtgctcgacgaggacggcttcgcgatcctgctcgaacacgggcccgag
cgcgctcaggaggcggcgctgcccgtcccggaagccgcgcccgagcccgccccggacggg
gacgggaagagcggcggcgagaacagcgcggaagacagcggggagtag

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