Streptomyces violaceoruber: B1H20_25940
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Entry
B1H20_25940 CDS
T05124
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
svu
Streptomyces violaceoruber
Pathway
svu03030
DNA replication
svu03410
Base excision repair
svu03420
Nucleotide excision repair
svu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1H20_25940
03410 Base excision repair
B1H20_25940
03420 Nucleotide excision repair
B1H20_25940
03430 Mismatch repair
B1H20_25940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svu03032
]
B1H20_25940
03400 DNA repair and recombination proteins [BR:
svu03400
]
B1H20_25940
Enzymes [BR:
svu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B1H20_25940
DNA replication proteins [BR:
svu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B1H20_25940
DNA repair and recombination proteins [BR:
svu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B1H20_25940
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1H20_25940
MMR (mismatch excision repair)
DNA ligase
B1H20_25940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B1H20_25940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
zf-TFIIB
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
ARF66395
UniProt:
A0A1V0UM98
LinkDB
All DBs
Position
5919020..5921287
Genome browser
AA seq
755 aa
AA seq
DB search
MAGEERVEQDSSVPAEAREKHALLAEQIEEHRFRYYVKDQPVVSDGEFDRLLRSLEALEE
EHPALRTPDSPTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWADRVAREAGTPDH
HFLCELKIDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGEDIPALV
EIRGEVFFPMEDFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG
AHEGLSIDRLSQAYDLLHAWGLPTARHNKVVDSLAGVREFIAYFGEHRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVEVA
GSEVEFATLHNQNVVRAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGTEKAFEMPTHCP
ECGTELRPMKEGDIDLRCPNARTCPAQLRERVFYLAGRKSLDIDHFGYVAAAALTRPLEP
AEPVLKDESDLFSLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQQGEPKKNA
VAMLEGIAAAKEAPLARVLTGLSIRHVGPVAAQELARQFRSIDRIDEASEQELADADGVG
PIIAASVKQWFAEDWHREILRKWREAGVRMADEGSDEDEGPRPLEGLTVVVTGTLAGHTR
DGAKAALQTLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEDGFAILLEHGPE
RAQEAALPVPEAAPEPAPDGDGKSGGENSAEDSGE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaagagcgggtggagcaggacagttcggtaccggcggaggcgcgggagaag
cacgcgctgctggccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccag
ccggtcgtcagcgacggcgagttcgaccggctgctccgctcgctggaggccctggaggag
gagcacccggcgctgcgcacccccgactcgccgacccagaaggtcgccgggccctaccgc
acggagttcacctccgtggagcaccgcgagcggatgctctccctggacaacgccttcgac
gacgaggagctggccgcctgggccgaccgggtggccagggaggccggcacgcccgaccac
cacttcctgtgcgagctgaagatcgacggcctcgcggtcaacctcacgtacgagaacggc
cgcctcacccgggcggccacccgaggcgacggccgtaccggcgaggacatcacccccaac
gtccggacgatcgccgagatcccgcaccgcctgaagggcgaggacatcccggcgctggtc
gagatccgcggcgaggtcttcttccccatggaggacttcgaggagctgaacgcccggctg
gtcgcggccgacgacaagcccttcgccaacccgcgcaacgcggcggccggatcgctgcgg
cagaaggacccgaaggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggc
gcccacgagggcctgagcatcgaccggctctcgcaggcgtacgacctgctgcacgcctgg
ggcctgcccaccgcccggcacaacaaggtcgtcgactccctcgcgggcgtacgggagttc
atcgcgtacttcggcgagcaccggcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatcccgctccagggccggctgggctccacctcgcgcgccccgcgctgg
gccatcgcctggaagtacgcccccgaggaggtcaacaccaagctcgtcaacatccgcgtc
ggcgtcggccgcaccggccgcgtcaccccgtacgcccaggtcgagccggtcgaagtggcc
ggttccgaggtcgagttcgccaccctgcacaaccagaacgtggtcagggccaagggcgtc
ctgatcggcgacaccgtggtcatccgcaaggcgggcgacgtcatcccggagatcctcggg
cccgtcgtcgacctgcgcgacggcaccgagaaggcgttcgagatgccgacgcactgcccc
gagtgcgggacggagctgcgcccgatgaaggagggcgacatcgacctccgctgccccaac
gcccgtacctgtcctgcccagttgcgcgagcgggtcttctacctggccgggcgcaagagc
ctcgacatcgaccacttcggctatgtggccgccgcggccctgacccggccgctggagccc
gccgagccggtcctcaaggacgagagcgacctcttctcgctcaccgtcgagcagttgctg
ccgatccgggcgtacgtgctggaccaggacagcgggctgcccaagcgcgacccgaagacc
ggcgaggagaagatcgccacggtcttcgccaaccagcagggcgagccgaagaagaacgcc
gtggccatgctggagggcatcgccgccgccaaggaggccccgctcgcccgcgtcctcacc
gggctctccatccgccatgtcggaccggtcgccgcccaggagctggcccgtcagttccgt
tccatcgaccggatcgacgaggcgagcgagcaggagctggccgacgccgacggggtcggg
ccgatcatcgccgcctccgtcaagcagtggttcgccgaggactggcaccgcgagatcctg
cgcaagtggcgcgaggccggggtgcggatggccgacgagggctccgacgaggacgagggg
ccccgccccctcgaagggctcaccgtcgtcgtcacgggcaccctggccggccacacccgc
gacggcgccaaggcggcgctccagaccctcggcgccaaggtcaccggatcggtgtcgaag
aagaccgcgttcgtggtcgtcggcgacaaccccggctccaagtacgacaaggcgatgcag
ctcaaggtccccgtgctcgacgaggacggcttcgcgatcctgctcgaacacgggcccgag
cgcgctcaggaggcggcgctgcccgtcccggaagccgcgcccgagcccgccccggacggg
gacgggaagagcggcggcgagaacagcgcggaagacagcggggagtag
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