Shewanella woodyi: Swoo_3988
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Entry
Swoo_3988 CDS
T00676
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
swd
Shewanella woodyi
Pathway
swd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Swoo_3988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_3988
Enzymes [BR:
swd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Swoo_3988
DNA repair and recombination proteins [BR:
swd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Swoo_3988
Prokaryotic type
Swoo_3988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ACA88245
UniProt:
B1KGA8
LinkDB
All DBs
Position
complement(4855255..4855923)
Genome browser
AA seq
222 aa
AA seq
DB search
MTRVKDWDGFLAAEREQDYYRALQAFVLAERANGKAVFPPEAEVFTAFNLTPLDKVRVVI
IGQDPYHGPDQAHGLCFSVKHGIKIPPSLVNMYKELATDIPGFTAPEHGHLSSWAEQGVL
MLNTVLTVEQGKAHSHAKSGWETFTGHAMELLNQQTSPIVFILWGAHAIKKGKVITGKQH
HILSGPHPSPLSAYRGFFGCQHFSKTNQILTSLGTPEINWQV
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgacacgagtaaaagattgggatggttttcttgccgcagagagggagcaagactactac
agggcactgcaagcttttgttttggcagagcgtgcaaatggcaaagctgtatttcctcct
gaagctgaggtgttcacagcctttaacctgactccactcgataaagtcagagtggtgatc
ataggccaagatccctatcatggaccagatcaggctcatggtctctgtttctcggtgaaa
catggtattaaaataccgccctctttggtgaatatgtataaagagctcgcgaccgacatt
cccggttttacagctccagagcatggccatctctcctcttgggccgaacagggggttttg
atgctcaatacagtgttgacggtagagcaggggaaggcacattcacatgcaaaatcaggt
tgggaaacctttactggacatgcaatggagctgttaaatcaacaaacatctcctattgta
tttattttatggggcgctcacgccattaaaaaaggcaaagttatcacaggcaagcagcat
catatcttatctggtccgcacccatctcccctatctgcataccgaggtttttttggttgt
cagcacttttcgaaaaccaatcaaatcttaacctcacttggaacccctgagatcaattgg
caggtttag
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