Streptomyces xanthophaeus: KPP03845_104480
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Entry
KPP03845_104480 CDS
T08962
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sxt
Streptomyces xanthophaeus
Pathway
sxt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KPP03845_104480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sxt03021
]
KPP03845_104480 (rpoB)
03400 DNA repair and recombination proteins [BR:
sxt03400
]
KPP03845_104480 (rpoB)
Enzymes [BR:
sxt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KPP03845_104480 (rpoB)
Transcription machinery [BR:
sxt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KPP03845_104480 (rpoB)
DNA repair and recombination proteins [BR:
sxt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KPP03845_104480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WCD88075
LinkDB
All DBs
Position
4854490..4857972
Genome browser
AA seq
1160 aa
AA seq
DB search
MAASRNASTNTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNAAWKSRVESA
LESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPAKNSVDECKERDFTYAAPL
FVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDK
TSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEFG
EYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGR
YKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETTGESGRSIVVETDDIDHFGN
RRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQ
LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIG
LIGSLASYGRVNAFGFVETPYRKVIEGVVTDEVDYLTADEEDRFVIAQANAGLNDEMRFT
ENRVLVRRRGGEIDYIAGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQA
VPLIKAEAPLVGTGMEYRCAVDAGDSIRAEKDGVVQEVSADYITVANDDGTYTTYRVAKF
SRSNQGTSVNQKVIVNEGDRIIESQVLADGPATEEGEMALGKNLLVAFMPWEGHNYEDAI
ILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAD
VVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDR
EEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDI
ILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADEWAQRLQAIGADQVAPGTNVATPV
FDGAREDELAGLLQHTIPNRDGERMVLPTGKARLFDGRSGEPFPDPISVGYMYILKLHHL
VDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDV
TGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFR
AAEELGIDLSRREPSSVEEV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccaatacgaacaacggtgccagcaccgccccgctg
cgcatctcctttgcaaagatcaaggagcccctcgaggttccgaacctcctggcgctgcag
accgagagctttgactggctgctcgggaacgccgcctggaagtctcgcgtcgagtcggcg
cttgagagtggacaggacgtccccaccaagtccggtctggaagagatcttcgaggagatc
tcgccgatcgaggacttctccgggtcgatgtcgctgaccttccgcgaccaccgtttcgag
ccggcgaagaactctgtcgacgagtgcaaggagcgcgacttcacgtacgcggctccgctg
ttcgtcacggccgagttcacgaacaacgagaccggagagatcaagtctcagacggtcttc
atgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgagcgt
gtcgtcgtgtcgcagcttgtccgttcccccggtgtctacttcgactcctccatcgacaag
acgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctggag
atggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcagtcc
gtcaccgtcctcctgaaggctctcggctggaccaccgagcagatcctcgaggagttcggc
gagtacgagtccatgcgcgccaccctggagaaggaccacacccagggtcaggacgacgcg
ctgctcgacatctaccgcaagctgcgtccgggcgaaccgccgacccgcgaggctgctcag
acgctgctcgagaacctctacttcaacccgaagcgctacgacctcgccaaggtcggccgc
tacaaggtgaacaagaagctcggcgccgacgagccgctggacgccggcgtgctcaccacc
gacgacgtcatcgcaacgatcaagtacctggtcaagctgcacgccggcgagaccgagacg
accggcgagtccggccgttcgatcgtggtcgagaccgatgacatcgaccacttcggcaac
cgtcgtctgcgcaacgtcggcgagctcatccagaaccaggtccgcacgggtctggctcgt
atggagcgcgtcgtccgcgagcgcatgacgactcaggacgtcgaggccatcacgccgcag
accctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagccag
ctgtcgcagttcatggaccagaacaacccgctgtcgggcctcactcacaagcgccgcctg
tcggctcttggtcccggtggtctgtcccgtgagcgggccggcttcgaggtccgtgacgtg
cacccgtcgcactacggccgcatgtgcccgatcgagacccctgaaggcccgaacatcggt
ctgatcggctcgctcgcctcctacggccgcgtcaacgcgttcggtttcgtcgagaccccg
taccgcaaggtcatcgagggtgtcgtcacggacgaggtcgactacctgaccgcggacgag
gaagaccgcttcgtgatcgcccaggccaacgccggcctgaacgacgagatgcgcttcacc
gagaaccgcgtgctggtccgccgtcgtggcggcgagatcgactacatcgccggcgacgac
gtcgactacatggacgtctccccgcgccagatggtgtccgtcgcgaccgcgatgatcccc
ttcctggagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgccaggcc
gttccgctcatcaaggcggaggcgccgctcgtcggcaccggcatggagtaccgctgtgcg
gtcgacgccggtgactcgatccgtgcggagaaggacggtgtcgtccaggaggtctcggcc
gactacatcaccgtcgccaacgacgacggcacgtacaccacgtaccgcgtcgccaagttc
tcccgctcgaaccagggcacctcggtcaaccagaaggtcatcgtcaacgagggtgaccgg
atcatcgagtcccaggtcctcgccgacggtcctgcgaccgaagagggcgaaatggccctc
ggcaagaacctgctcgtcgcgttcatgccgtgggaaggtcacaactacgaggacgcgatc
atcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggagcac
gaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccgaac
gtctccgaggaggtcctcgcggacctcgacgagcgcggcatcatccgcatcggtgcggac
gtcgtcgccggcgacatcctggtcggcaaggtcacgcccaagggtgagaccgagctgacc
ccggaggagcgcctgctccgcgcgatcttcggtgagaaggcccgcgaggtgcgtgacacc
tcgctcaaggtccctcacggtgagatcggcaaggtcatcggtgtccgcgtcttcgaccgc
gaggagggcgacgagcttcctccgggcgtgaaccagctggtccgcgtctacgtcgcccag
aagcgcaagatcaccgacggtgacaagctcgccggccgccacggcaacaagggtgtcatc
tccaagatccttccgatcgaggacatgcccttccttgaggacggcacgccggtcgacatc
atcctgaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatccac
ctcggctggctcgccagccgcggctgggacgtctccggcctggcggacgagtgggcgcag
cgcctccaggcgatcggcgccgaccaggtcgctcccggtaccaacgtcgccaccccggtg
ttcgacggtgcccgcgaggacgagctggcaggtctgctgcagcacacgatcccgaaccgc
gacggcgagcgcatggtgctcccgaccggtaaggcgcgtctgttcgacggccgctccggc
gagccgttcccggacccgatctcggtcgggtacatgtacatcctcaagctccaccacctg
gtcgacgacaagctccacgctcggtcgaccggtccgtactcgatgatcacgcagcagccg
ctgggtggtaaggcgcagttcggtggccagcgcttcggtgagatggaggtgtgggcgctc
gaggcttatggcgccgcttacgccctccaggagctgctgaccatcaagtccgacgacgtc
accggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccgggc
attcccgagtccttcaaggtgctcatcaaggaaatgcagtcgctctgcctcaacgtggag
gtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttccgc
gcggcggaggagctcggtatcgacctgtcccggcgcgagccgagcagcgtcgaagaggtc
tga
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integrated database retrieval system
