Sphingobium sp. YBL2: TZ53_03875
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Entry
TZ53_03875 CDS
T03855
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03420
Nucleotide excision repair
syb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TZ53_03875
03430 Mismatch repair
TZ53_03875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_03875
Enzymes [BR:
syb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TZ53_03875
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TZ53_03875
MMR (mismatch excision repair)
Other MMR factors
TZ53_03875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJR23034
UniProt:
A0A0C5X1Q4
LinkDB
All DBs
Position
complement(806435..808420)
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AA seq
661 aa
AA seq
DB search
MFEILPLTPELLAALGDELGGCDFTDQSQMDFLANAAACDVQAAPGNGKTTLLAAKLALL
SRNWTTTRRGVCVISHTNAARTEVEDLIARHPTAARLMAYPHFTGTVTAFINQYLALPYL
RGLGWNLRQVDDDAFEAEALRRYPSFWALKNQAKKAGATVERWVARLTLDPAFDAEGSEP
DSIAVQRLKGQHGADTACGQALAKLKASMVKSGLYRYADMTALAWRALAETPALAARLRD
RFPLVILDEAQDTHGDQLRLLEHIFKHDDAAFQRLGDSNQTLYEDDAAAPVYWQPAPGCI
PLDTSRRFGGEIAAFASQLTVRQTQTIVGVGERPGLRLMVLFDEATIGGVLGAFAEEAEA
LWGADSGARDVWAVASRHNRPKKKGAWLPRSLVDYHQDYRSESGARAKANLLCRQLQKAA
LHHAAGRQPAEIAEMLAAAMAGLARAHDIKAAHDRPVTTQNVWAALRHRDPATPRAVRRL
LRDQVLVGTAAWDEAAWLDLLESLLLHFAPPPEAAAQSIADFCEFVAEEKAQAADPERRS
TKQVRIGEVTLRLGSIHSVKGKSVDGILVVESEVWKGVAGKDQCIDLSTVLPRAFGVAPQ
PLEGVALTAATNVFVGVTRPRELLALAVRKSHAGAFLAQAQAQGWKLVDLVDRDPRPGAG
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagatactgccgctaaccccggagctgctcgccgcgctcggcgacgagcttggc
ggctgcgatttcaccgatcaaagccagatggacttcctggccaatgccgcggcttgcgac
gtgcaggccgcgcctggcaatggcaagaccacgctgctggcggcgaagctcgccttgctc
tcacgcaactggacgaccacgcggcgcggcgtctgcgtgatctcgcacaccaacgccgcg
cgcaccgaagtggaagatctgatcgcgcgccatccaacggccgcgcggctgatggcctat
ccgcatttcacaggcacggtcaccgccttcatcaaccagtatctggccttgccctatctg
cgcggccttggctggaacctccgccaggttgatgacgatgcgttcgaggccgaggcgctg
cgccgctatccgtccttctgggcgctgaagaaccaggccaagaaggctggcgccacggtc
gagcgctgggtcgccaggctgaccctcgatccggcgttcgatgcggagggaagtgagccc
gacagcatcgccgtccagcggctgaaaggccagcacggcgccgacaccgcttgcggacag
gccctggcgaagctcaaggcctcgatggtgaagagtggtctctatcgctacgccgacatg
accgcgctcgcctggcgggcgctcgccgaaaccccagcgctggccgcacggctgcgcgac
cgcttcccgctcgtgatcctcgacgaggcgcaggacacgcacggcgaccagctgcggctg
ctggagcatatcttcaagcatgacgacgcggcgttccagcgcctgggcgacagcaaccag
acgctctatgaggacgatgcggccgccccggtctactggcagccggcgccgggctgcatt
ccgctcgacaccagcaggcgcttcggcggcgagatcgccgccttcgcgagccagctgacc
gtccgccagacccagactattgtcggtgttggcgaaaggccgggcctgcgcttgatggtc
ctgttcgatgaggcgacgatcggcggggtgctgggcgccttcgccgaggaagccgaggcg
ctatggggtgccgatagcggcgcgcgcgatgtctgggcggtcgcttcgcggcacaatcgc
ccgaagaagaagggcgcatggctgccccgcagcctggtcgattatcatcaggactatcgc
agcgagagcggcgcgcgggccaaggccaatctcctgtgccgccagctccagaaggccgcg
ctccaccatgccgccggtcgccagccggcggagattgccgagatgctggccgcagcgatg
gcgggtctggcgcgcgcccatgacatcaaggcggcccacgatcggccggtcaccacgcaa
aatgtttgggccgcgctccggcatcgcgacccggcgacgccgcgcgcggttcgccgcctg
cttcgcgaccaagtgctggtcgggacagcggcctgggacgaggccgcttggctggacctc
ctcgaatcgctcctgctgcacttcgccccgccccctgaagcggccgcgcagagcatcgcc
gatttctgcgagttcgttgccgaggagaaggcccaggccgccgacccggagcgccgctcg
accaagcaggtgcggataggggaggtgacgcttcggctgggctcgatccattcggtcaag
ggcaagagcgtggacggcattctcgtcgtcgagagcgaggtttggaagggcgtcgcgggc
aaggaccagtgcatcgatctgagcaccgtgctgccgcgcgccttcggcgtcgcccctcag
ccattggagggggtggcgctgaccgccgcaaccaatgtctttgtcggcgtcacccgacca
agggagctcttggcgctggcggtccgcaagagccatgcgggtgctttcctcgcccaggcg
caggcgcagggatggaagctggttgatctggtcgatcgtgacccccggcctggggcggga
ggctag
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