Sphingobium sp. YBL2: TZ53_05935
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Entry
TZ53_05935 CDS
T03855
Name
(GenBank) integration host factor
KO
K03530
DNA-binding protein HU-beta
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syb03032
]
TZ53_05935
03036 Chromosome and associated proteins [BR:
syb03036
]
TZ53_05935
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_05935
DNA replication proteins [BR:
syb03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TZ53_05935
Chromosome and associated proteins [BR:
syb03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
TZ53_05935
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
TZ53_05935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
DUF3130
HHH_5
HU-CCDC81_euk_2
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
AJR23351
UniProt:
A0A0C5XF70
LinkDB
All DBs
Position
1254913..1255188
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AA seq
91 aa
AA seq
DB search
MNTTELVEAVAAAQGVTKTDAKKILDGFVEAIANAAAKGEEISINGFGKFKVKASPARDG
RNPRTGEPMSIAASRKLGFTPAKAIKDKLNG
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaataccactgagctggtcgaggcggtcgccgccgcccagggcgtcaccaagaccgac
gcgaagaaaatcctggacggctttgttgaagcgatcgccaatgccgccgccaagggcgaa
gaaatctcgatcaacggctttggcaagttcaaggtcaaggcgagcccggcacgcgacggc
cgcaatccgcggactggcgaaccgatgagcattgctgcatcgcgtaagctcggtttcacg
cctgccaaggcgatcaaggacaagctcaacggctga
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