Synechocystis sp. PCC 6714: D082_26050
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Entry
D082_26050 CDS
T03386
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
syj
Synechocystis sp. PCC 6714
Pathway
syj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D082_26050 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syj03021
]
D082_26050 (rpoB)
03400 DNA repair and recombination proteins [BR:
syj03400
]
D082_26050 (rpoB)
Enzymes [BR:
syj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D082_26050 (rpoB)
Transcription machinery [BR:
syj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D082_26050 (rpoB)
DNA repair and recombination proteins [BR:
syj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D082_26050 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AIE75134
LinkDB
All DBs
Position
complement(2576920..2580228)
Genome browser
AA seq
1102 aa
AA seq
DB search
MTNLATTMLPDLIEIQHASFHWFLEEGLIEELNSFSPISDYTGKLELHFLGKDYKLKQPK
YDVDESKRRDASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTFIINGAERVIV
NQIVRSPGVYYKKELDKNGRRTYSASLIPNRGAWLKFETDKNGLVYVRIDKTRKLSAQVL
LKAIGLSDNEILDSLSHPEFYQKTLDKEGNPTEEEALVELYKKLRPGEPPTVSGGQQLLE
SRFFDPERYDLGRVGRYKLNKKLRLNEADTTRVLTPQDILAAINYLINLEFDVGTTDDID
HLGNRRVRSVGELLQNQIRVGLNRLERIIRERMTVSESDALTPASLVNPKPLVAAIKEFF
GSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPVETPEG
PNAGLIGSLATCARVNDYGFIETPYFRVESGRVRKDLDPVYLTADEEDDMRVAPGDIPTD
EEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPVQIISVATSMIPFLEHDDANRALMGSN
MQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRTHGIVTYVDATEIRVQPHSPDNPEE
KGEEIVYPIQKYQRSNQDTCLNQRPLVYAGEDVVPGQVLADGSATEGGELALGQNILVAY
MPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRN
LDENGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKARDVRDNSLRVPNGE
KGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDKMAGRHGNKGIISRILPIED
MPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRD
TVHGLLEEASQRPNKDWVFNQDHPGKIQVFDGRTGEPFDRPITVGQAYMLKLVHLVDDKI
HARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNE
ALNAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAAHKVQLSEDGESADAEVDLMIDSQR
RAPNRPTYESLHTEEDLEEEEV
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccttgccaccacgatgttgcccgatttaatcgaaatccaacacgctagtttc
cactggtttttggaggaaggtttaatcgaggaattgaatagtttttcccccatttctgac
tacacaggcaagttagaactccattttttgggcaaagattacaagctcaaacaacccaag
tacgacgttgacgaatcgaaacgacgggatgcaagctactcggtgcaaatgtatgtgccc
acccgtttaatcaacaaggaaactggagaaattaaggagcaggaagtcttcatcggcgat
ctccccctgatgacggaacggggaacctttattatcaacggtgccgagcgggtcatcgtc
aaccaaattgtgcgatcaccgggggtttactacaaaaaagaattagacaaaaacggccgt
cgtacctactccgcttccctcattcccaaccggggagcctggctcaagtttgaaaccgac
aaaaacggcttggtctacgtccgcattgataaaacccgtaagctatccgcccaggtcctc
ctcaaggcgatcggtctgagcgataacgaaattctcgactccctcagccatccggagttt
taccaaaaaaccctagacaaggaagggaatcccacagaagaagaagccttggtggaacta
tacaaaaaactccgtcccggtgaaccccccactgttagtggcggccaacagttactcgaa
tcccgtttctttgaccccgaacgttatgacctcggtcgggtcgggcgctacaaacttaac
aaaaaactacggctcaacgaagcggataccacccgggtactgaccccccaagatatcctc
gccgccattaactatctaatcaatttggaattcgatgtaggtaccaccgacgacatcgac
cacttgggtaatcgtagggtacggtccgtaggggaactgttgcagaaccaaatccgggta
ggcttgaaccgcctggagcggattattcgggagcgcatgaccgttagtgagtccgatgct
cttacccccgcctccctggtgaaccccaagcctctggtggcagctattaaggagttcttt
ggttcctctcaactttcccagttcatggaccaaaccaatcccctggcggagttgacccat
aaacgtcgtatttctgccctcggccctggaggtctaactcgggagcgggctggctttgcg
gtgcgggatattcacccttcccaccacggccgcatttgcccagtggaaacgccagaaggc
cccaacgccggtttaatcggctccttggccacctgtgcccgggtcaatgattacggtttc
attgaaactccctattttcgagtggaaagtggtcgagtcaggaaggatttagaccctgtt
tacctcaccgccgatgaagaagatgacatgcgggtagcccccggggacattcccaccgac
gaagaggggaacatcattggcgaatcagtacctattcgctaccgccaggaattttccact
accagcccagaacaggtagactatgttgccgtgtctccggtgcaaattatttccgttgcc
acctccatgattcccttcctggagcacgatgatgctaaccgggccctgatgggatccaac
atgcaacgccaagcggtgcccctgttgcgccccgaaaggccgttggtgggtacaggtttg
gaagcccaggctgctcgcgactcaggtatggtgattgtttcccgcacccatggcattgtc
acctatgtggatgccacggaaattcgggtgcaaccccactcccccgacaatccagaggaa
aaaggggaagaaatcgtttacccgatccagaaatatcagcgctctaaccaagacacctgt
ttaaatcagcgtcccctagtctatgccggggaagatgtggtgccaggacaggtgctggcg
gacggttctgctacggaagggggagagttagccctgggacaaaacatccttgtggcctat
atgccctgggaaggctataactacgaggacgccattctcatcagtgaacggctagtctat
gacgacgtttacactagtatccacatcgaaaagtttgaaattgaggctcgccagaccaaa
ctagggcccgaagaaatcacccgggaaattcccaatgtcggggaagatgccctgcgtaat
ttggacgaaaacggtatcatccgcatcggtgcttgggtggaatccggtgacattctggtg
ggcaaagtaactcccaaaggggaagcagaccagcccccagaggaaaaactcctgcgggcc
attttcggcgagaaagcccgagatgtgcgggataattccctgcgggtgcccaacggtgaa
aaaggtcgggtggtggatgtacgggtcttcacccgggagaaaggggatgaactgcccccc
ggcgctaatatggttgtgcggatctacgttgctcagaaacgcaaaatccaagtgggagac
aaaatggccggtcgccacgggaataaagggattatttcccgcattttgcccattgaagat
atgccctatctcccagatggtcgccccattgacattgccctcaatcccctgggggttcct
tcccggatgaacgtgggccaggtgtttgaatgtttgctgggttgggctggggaaaacctg
ggtgtgcgcttcaaaattaccccctttgatgagatgtacggggaagaagcatctcgggac
acagtccatggcttgctagaggaagcatcccaacgccccaacaaagactgggtatttaac
caagaccatcccggcaaaatccaggtgtttgatggtcgtactggagagccctttgaccga
cccattacggtgggccaagcttacatgctcaaactagtacatttggtggacgataagatc
catgcccgctccactgggccctattcccttgttacccaacagcctttggggggtaaagcc
caacagggggggcaacggtttggagaaatggaagtgtgggccttggaagcctatggcgcc
gcgtacattttgcaggaattactcaccgttaaatccgatgatatgcaaggccgcaatgaa
gccctcaatgccattgtcaaaggtaagagtattccccgccccggcaccccggaatccttc
aaggtgctaatgcgggaactccagtcccttggtttggacattgcagctcacaaggtgcag
ttgtccgaagacggggaaagtgccgacgcagaggtggatttgatgattgatagccagcgc
cgggcccctaaccgccccacctatgaatccctccacactgaggaggatttggaagaggag
gaagtgtag
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