Shewanella yunxiaonensis: KDN34_00920
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Entry
KDN34_00920 CDS
T07775
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
syk
Shewanella yunxiaonensis
Pathway
syk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDN34_00920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syk03021
]
KDN34_00920 (rpoB)
03400 DNA repair and recombination proteins [BR:
syk03400
]
KDN34_00920 (rpoB)
Enzymes [BR:
syk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDN34_00920 (rpoB)
Transcription machinery [BR:
syk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDN34_00920 (rpoB)
DNA repair and recombination proteins [BR:
syk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDN34_00920 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QUN06074
UniProt:
A0ABX7YTT2
LinkDB
All DBs
Position
188174..192205
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKNFGKRPQVLDIPYLLAIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDREAAAGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATILLRALDMSTQEVLDTFFDRVDFSIKQDSLVMK
LVPERLRGETASYDIKDSAGNLLVEKGRRITARHIKQLEKSNTTELEVPVDYIVGKLAAQ
DYIDPDTGEVLLTANDELTLEVLANLSQAGIKDISTLYVNELDHGAYMSDTLRIDSTTNR
MEALVEIYRMMRPGEPPTKDAAEALFQNLFFAEERYDLSKVGRMKFNRRLDIDENEGTGI
LSKSDIVAVMKKIIEIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNAYGFLETPYRKVVDGVV
TDEVEYLSAIEEGRYVVAQANIDLDENGRILDEQVACRHKGESTFMRVSDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLLSEKPLVGTGIERTLAMDSGVCVAAK
RGGVIDYVDASRIVVKVNEEELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCHVGEPVTR
GDVLADGPSTDMGELALGQNMRIAFMTWNGYNYEDSILISERVAQQDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTVIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD
LTEEFKILEEGVFDRARNLLLNSGVSEAKLADMPRKDYLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVVSKI
CPIEDMPYDEHGVPMDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNRINTMLEEQREVA
ELREYIKKVYALGDGVKQKVDIDSFTDDEVMRLASHLKLGLPTATPAFDGAEEKEIKDML
ELAGLPTSGQMTLYDGLTGNAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaaaacttcggtaagcgtcctcag
gtactggacattccttacctgttggcgattcagttagattcattcaagaagttcaccgat
caagatcccaccggtgagcgtggcttagaagccgctttccgcagcgttttcccgattaag
agcttttctggcaattccgaattgcagtatgtcagctacaagctgggcgagcctgtattc
gatgtcaaagagtgccagattcgtggcgtaactttctccgcaccgctgcgcgtaaaactg
cgcctggtgttgtttgatcgtgaagccgccgcaggcactgttaaagatattaaagaacaa
gaagtttacatgggtgatatcccattgatgactgagaacggtactttcgttattaacggt
accgagcgtgtgattgtttctcagttgcatcgttccccaggtgtattcttcgaccatgac
cgtggtaaaacccactcctccggtaaagtgttgtataacgctcgtatcattccttaccgt
ggttcatggctggattttgaattcgatccaaaagatgcgctgtttgtgcgtattgaccgt
cgtcgtaagttgcctgcgacaatcctgctgcgcgcactggatatgtctacccaggaagtc
ctggataccttcttcgaccgcgtagatttcagtatcaaacaagattcgctggtgatgaag
ctagttcctgaacgtctgcgcggtgaaaccgccagttacgatatcaaggattcagcgggc
aatctgttggtggaaaaaggccgtcgtatcactgcccgtcacatcaagcagttggaaaag
tccaataccactgagctggaagtgccggtggattacatcgttggtaagttagccgctcag
gactatatcgatcctgatactggtgaagtattgctgactgcaaacgatgaactgacgctg
gaagtgctggctaacctgtcacaagcaggcatcaaagatatcagcactctctatgtcaac
gagttggatcacggtgcttacatgtctgatacgctgcgtatcgactctaccaccaatcgt
atggaagcattggtcgagatctaccgtatgatgcgtcctggtgaaccaccaaccaaagat
gcggctgaagccttgttccagaacctgttcttcgcagaagaacgctacgacctgtctaaa
gtgggccgtatgaagttcaaccgtcgtctcgatatcgatgagaacgaaggtaccggcatt
ctgagcaaatcagacatcgttgctgttatgaagaaaatcatcgaaatccgtaacggtttt
gatgaagtggacgatattgaccacttgggcaaccgtcgtatccgttctgtgggcgaaatg
gcagaaaaccagttccgcgttggtttagtacgtgttgaacgtgctgtgcgtgaacgtctg
tcactgggcgacctgaacgaactgatgccacaggatctgatcaatgctaagccgatctct
gcggcagtgaaagagttctttggctcttcacagttgtcacagtttatggaccagaacaac
ccgctgtcagaagtaacgcacaagcgtcgtatttctgcacttggccccggtggtttgacg
cgtgaacgcgcaggcttcgaagtgcgtgacgttcacccaactcactacggtcgtctgtgt
ccaattgagacccctgaaggtccaaacattggtctgatcaactcattgtctactttcgcg
cgtactaacgcctatggcttcttggaaacgccataccgtaaagtcgttgatggcgtagta
actgatgaagttgaatacttgtccgccattgaagaaggtcgttatgtggttgctcaggca
aacatcgacctcgacgaaaatggccgcattctggatgagcaggttgcttgccgtcataaa
ggtgaatctacctttatgcgcgtttccgacatccagtatatggacgtatcaccacagcag
atcatctcggtagcggcttctttgattccattcttggaacacgatgacgcgaaccgtgcc
ttgatgggtgcgaacatgcaacgtcaagcggttccaacactgctatctgaaaaaccattg
gtagggactggtattgaacgtaccctggcgatggattccggtgtgtgtgtcgctgctaaa
cgtggtggtgtcattgattacgttgatgctagccgtatcgtggttaaagtaaatgaagaa
gagctgcgcccaggcgaagcgggtatcgacatttacaacctgactaaatatacccgttct
aaccagaacacctgtattaaccagcgtccttgctgccatgttggtgagccagtgactcgt
ggtgacgtactggctgacggcccatctactgatatgggcgagttggcgctgggtcagaat
atgcgtatcgcattcatgacctggaatggttacaactatgaagactccatcctgatctct
gagcgtgttgcgcagcaagatcgcttcaccaccattcacattcaggaactgtcctgtatc
gctcgtgataccaaactgggtagcgaagagattacagctgacatcccgaacgtaggtgaa
tccgcactctccaaactggatgagtccggtatcgtctatattggtgctgaagtgaagggc
ggtgacatcctggtcggtaaagtgacaccaaaaggtgaaactcagctgacaccagaagaa
aaactgctgcgggcgattttcggtgaaaaagcctctgacgtgaaggacagctcactgcgt
gttcctaactcagtgaaaggtaccgttatcgacgttcaggtcttcactcgtgatggtgtc
gaaaaagacaaacgtgctatcgaaattgaagagatgcacattgctcaggcacgtaaggac
ttgactgaagagttcaagatcctggaagaaggtgtgtttgatcgtgctcgtaacctgctg
ctgaacagcggtgtcagtgaagccaaactggcagatatgccacgtaaggattatctggtt
caggttatcgacgatgaagccaaacagactgagctggaacagctggctgagcagcacgaa
gagctgaaagcagacttcgacaagaaatttgaagctaaacgccgcaaaatcacccagggt
gatgacttggctccaggcgtactgaagatcgttaaagtgtacttggcggttaaacgtacc
attcaacctggtgacaagatggcgggtcgtcacggtaacaagggtgtggtctccaagatc
tgtcctatcgaagatatgccatatgatgaacacggcgtaccgatggacatcgtgttgaac
ccactcggcgtaccttcacgtatgaacatcggtcaggtattggaagtgcacttgggtgca
gcggccaaaggtatcggtaatcgcatcaacaccatgctggaagaacagcgtgaagtggca
gaactgcgtgaatacatcaagaaggtttatgccttaggtgatggtgtgaagcagaaggtt
gatatcgactcctttactgatgatgaagtgatgcgtctggccagccacctgaaactgggt
ctgccaacagcaacacctgcgtttgacggtgccgaagagaaagagatcaaagatatgctg
gaactggctggtctgccaacttccggtcagatgactctttacgatggtcttactggtaat
gccttcgaacgtcctgtgaccgtcggttacatgtacatgctgaaactgaaccacttggta
gacgacaagatgcacgcccgttctaccggttcttacagcctagtgactcagcagccactg
ggtggtaaggcacagttcggtggtcagcgtttcggtgagatggaagtgtgggctctggaa
gcgtatggcgctgcatatacgctgcaggaaatgctcactgtgaaatccgatgacgttaac
ggtcgtactcagatgtacaagaacatcgttgacggcaatcaccagatgcaacccggtatg
cctgaatccttcaacgtattgctgaaggaaatccgttcactcggtatcaatatcgaactg
gaccaagagtaa
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