Synechococcus sp. CB0101: CB0101_07035
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Entry
CB0101_07035 CDS
T06409
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sync
Synechococcus sp. CB0101
Pathway
sync03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sync00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CB0101_07035 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sync03021
]
CB0101_07035 (rpoB)
03400 DNA repair and recombination proteins [BR:
sync03400
]
CB0101_07035 (rpoB)
Enzymes [BR:
sync01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CB0101_07035 (rpoB)
Transcription machinery [BR:
sync03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CB0101_07035 (rpoB)
DNA repair and recombination proteins [BR:
sync03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CB0101_07035 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QCH14709
LinkDB
All DBs
Position
complement(1295750..1299040)
Genome browser
AA seq
1096 aa
AA seq
DB search
MSSAIQVAKTATYLPDLVEVQRASFKWFLEKGLIEELESFSPITDYTGKLELHFIGSEYR
LKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQEVFIGELPLMTERGTFIINGA
ERVIVNQIVRSPGVYFKDEQDKNGRKTFNASLIPNRGAWLKFETDKNDLLHVRVDKTRKI
NAHVLMRAIGLSDNDVLDKLRHPEYYQKSIEAANDEGIASEDQALLELYKKLRPGEPPSV
SGGQTLLHSRFFDPKRYDLGRVGRYKINKKLRLTIPDATRTLTPEDVLSTIDYLINLELD
VGGATLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETESLTPAQLVNPK
PLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHYG
RICPIETPEGPNAGLIGSLATHARVNEYGFIETPFWKVENGIVLKQGDPLYLSADLEDEC
RVAPGDVATDADGRIKADLVPVRYRQDFETVPPEQVDYVQLSPVQVISVATSLIPFLEHD
DANRALMGSNMQRQAVPLLRPERPLVGTGLETQVARDSGMVPITTVNGTVAYVDATAIVI
RDEEGNDHTHYLQKYQRSNQDTCLNHRPIVKLGDPVIAGQVLANGSACEGGEIALGQNVL
IAYMPWEGYNYEDAILVSERLVRDDLYTSVHIEKYEIEARQTKLGPEEITREIPNVAEES
LGNLDEMGIIRVGAYVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVP
STERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRILP
LEDMPYLPDGSPIDIVLNPLGVPSRMNVGQVFECLMGWAASHLDCRVKVVPFDEMHGPET
SKNTVQAYLEAAKSQPGKDWVYDPENPGKIQLIDGRTGEAFDQPVTVGYAHILKLVHLVD
DKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQG
RNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVYTDAGEEVDLMQDINPRRSTP
NRPTYESLGVADYDDD
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgcgatccaggtcgccaagaccgccacttacctgcccgatctggtggaggta
cagcgcgcgagcttcaaatggtttctggagaagggcctgatcgaggagctggagagcttc
tcgccgatcaccgattacaccggcaaacttgagctgcacttcatcggtagcgagtaccgc
ctgaagcgcccccgccacgatgtggaagaggccaagcgtcgtgacgcgaccttcgcctcc
cagatgtatgtgacttgccgcctggtcaacaaggagaccggcgagatcaaggagcaggaa
gtgttcatcggggaactgcccctgatgaccgagcgcggcacgttcatcatcaacggcgct
gagcgcgtgatcgtgaaccagatcgtgcgttcacccggcgtttatttcaaagacgagcag
gacaagaacggccgcaagaccttcaacgccagcctgatccccaaccgcggcgcctggctg
aagttcgaaaccgacaagaacgatctgctgcacgttcgcgtcgataagacccgcaagatc
aacgcccacgtgttgatgcgggccatcggcctgtcggacaacgacgtgctcgacaagctg
cggcaccccgagtactaccagaagtcgatcgaggccgccaacgacgaaggcattgcctcg
gaagaccaggccctgctggagctctacaagaagctgcgtccgggtgaaccgccctcagtg
agcggtggtcagaccctgctgcacagccgtttcttcgatcccaagcgttacgacctgggc
cgcgttggtcgctacaagatcaacaaaaagctgcgtctcaccatccccgacgccacccgc
accctcacccctgaggacgtgctgagcacgatcgattacctgatcaacctcgagctcgat
gtgggcggcgccaccctcgatgacatcgaccacctcggcaaccgccgcgttcgctccgtg
ggcgaactgctgcagaaccaggtgcgcgtgggcctgaaccgcctcgagcggatcatcaag
gagcgcatgaccgttggtgagaccgagagcctcaccccggcccagctggtgaaccccaag
cccctggtggcggcgatcaaggagttcttcggctccagccagctgagccagttcatggat
cagaccaaccccctggctgagctcacccacaagcgccgcatcagcgccctgggcccaggt
ggtctcacccgtgagcgcgccggcttcgccgtgcgcgacatccacccctctcactacggc
cgcatctgcccgatcgagaccccggaaggtccgaacgccggtctgatcggttcgctggcg
acccacgcccgcgtgaacgagtacggcttcatcgagacccccttctggaaggtggagaac
ggcatcgttcttaagcaaggcgatcccctctacctctccgccgatctcgaagacgagtgc
cgcgtcgcccccggcgatgtggccaccgatgccgatggccgcatcaaggccgatctggtg
ccggtgcgctatcgccaagacttcgagaccgtgccgcctgagcaggtggattacgtgcag
ctctcaccggtgcaggtgatctccgtggccacctcgctgatccccttcctcgagcacgac
gacgccaaccgcgccctgatgggctcgaacatgcagcgccaggctgtgccgctgctgcgc
cccgagcgtccgctggtgggcaccggcctggaaacccaggtggcccgcgactccggcatg
gtgccgatcaccaccgtgaacggcacggtggcttacgtggatgccaccgccatcgtgatc
cgcgatgaagagggcaacgaccacacccactacctgcagaagtaccagcgctccaaccag
gacacctgcctgaaccaccgcccgatcgtgaagctcggcgacccggtgatcgctggtcag
gtgctggcgaatggttcggcctgtgagggcggcgaaatcgccctcggtcagaacgtgctg
atcgcctacatgccctgggagggctacaactacgaggacgcgatcctggtgtctgagcgc
ctggtgcgcgacgacctctacacctcggtgcacatcgagaagtacgagatcgaagcccgt
cagaccaagctcggccctgaagagatcacccgcgagattcccaacgttgccgaggagagc
ctgggcaacctcgatgagatgggcatcatccgcgtgggcgcctacgtggaaagcggcgac
atcctggtgggcaaggtgactcccaagggtgaatccgaccagcccccggaggagaagctg
ctgcgcgcgatcttcggtgagaaggcccgcgatgtgcgcgacaactccctgcgggtgccc
agcaccgagcgcggccgcgtcgttgacgtgcgcatctacacccgtgaacagggtgatgag
ctgccgcccggcgcgaacatggtggtgcgggtctatgtggcgcagcgccgcaagatccag
gtgggcgacaagatggccggccgccacggcaacaagggcatcatcagccgcattcttccc
ctggaagacatgccctacctgcccgacggcagccccatcgacatcgtgctcaaccccctg
ggtgtgccgagccgcatgaacgtgggtcaggtgttcgagtgcctgatgggctgggccgct
tcgcacctggattgccgggtgaaggtggtgccgttcgatgaaatgcacggccccgaaacc
tccaagaacaccgttcaggcctacctggaggcggccaagtcgcagcccgggaaggactgg
gtgtacgacccggagaaccccggcaagatccagctgatcgatggccgcaccggcgaagcc
ttcgaccagccggtcacggtgggctacgcccacatcctcaagctggtgcacttggtggac
gacaagatccacgcccgttccaccggtccttactcgctggtgacccagcagcccctcggt
ggtaaggcccagcagggcggccagcgtttgggtgagatggaggtgtgggctctcgaggcc
tacggcgccgcttacaccctgcaggaactgctcaccgtcaagtccgacgacatgcagggc
cgcaacgaagcgctcaacgcgatcgtgaagggcaagcccatcccccgccccggcaccccc
gagtcgttcaaggtgctgatgcgcgagctgcagtcgctgggtctcgacatcgcggtctac
accgacgctggcgaggaagtggacctgatgcaggacatcaacccccgccgcagcaccccc
aaccggcccacctacgaatccctcggcgtcgcggattacgacgacgactga
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