Synechococcus sp. NIES-970: NIES970_08480
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Entry
NIES970_08480 CDS
T09762
Symbol
rne_2
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
synn
Synechococcus sp. NIES-970
Pathway
synn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES970_08480 (rne_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synn03019
]
NIES970_08480 (rne_2)
03009 Ribosome biogenesis [BR:
synn03009
]
NIES970_08480 (rne_2)
Enzymes [BR:
synn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NIES970_08480 (rne_2)
Messenger RNA biogenesis [BR:
synn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES970_08480 (rne_2)
Ribosome biogenesis [BR:
synn03009
]
Prokaryotic type
rRNA processing factors
NIES970_08480 (rne_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAW95929
LinkDB
All DBs
Position
890904..893015
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AA seq
703 aa
AA seq
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MPKQIIIAEQHQIAAVFWEDQIQEIVVSTGAQQVGDIYLGIVENVIPGIDAAFVNIGDTE
KNGFIHVTDLGPIRLRKNSSSIIELLEPQQRALVQVMKEPTGNKGPRLTGNITLPGRYVV
LMPYSKGVNLSRRISDESERNRLRALAVLMKPPGMGLLVRTEAEGTDEESIIEDLELLQK
QWESIQQQANHGRAPLLINRDDDFIQRVLRDMYSDEVNRIVVDSAHGVKRVKSQLMNWQG
GKAPDGLLIDHHREKQSVLDYFRVNAAIREALKPRVELPSGGYIIIEPTEALTVIDVNSG
SFTKSATARETVLWTNYEAATEIARQLRLRNIGGVIVVDFIDMDSRHDQLKLLEHFTGIL
KSDKARPQIAQLSELGLVELTRKRQGQNLYELFGKPCAHCNGLGHLVHLPGEEEAVPLQL
SVMSSLSLQSGSRTPGESRPVLPGRRTPNTAHGRRLTSRVSRSKLVTQEPVSGTEPLNLV
HHPDYQEQGGSGNSRRRRRRAPEVASKPVLRDVKELREDNGNDGGDRLQQNEPQESKVVT
PENNNNTPAPRFERRERGRFRRDEPKETIQVEMTEQEKSLYALIGVSPLVRLDPAIKKDP
RSTIVQIVSPGSLDAAQEEAAVTPEKTKSEATELEPVESEPNQPQQLDLTHLATAKKQEL
SSATSGESTPQVATVPAVTPENNAEEEAPVGRRRRRRRSSSSN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcaaattattattgcagagcagcatcagattgctgccgttttttgggaagac
caaatccaagaaattgttgtatctactggtgctcaacaagtcggggacatttatctaggc
attgtcgaaaatgtcattcctggtattgacgcagcgtttgtcaatatcggcgatacagaa
aaaaacggctttatccacgtcaccgacctcggccccatccgactccgaaaaaattccagc
tcaatcatcgaactccttgaaccccaacaaagagccttggttcaagtcatgaaagaacca
accgggaataaggggccgcgcttaaccggaaatattaccctgcccggtcgctacgtagtc
ttgatgccctacagcaaaggtgttaatctctcccgacgcatcagtgatgaaagtgaacgt
aatcgcctacgggccttagccgtgctgatgaaacccccaggtatgggtctcctcgttcgc
accgaggccgaagggaccgatgaagaatcgatcatcgaagatctcgaactccttcaaaaa
cagtgggaatcgatccagcaacaggcaaatcatggtcgcgcgccgctcctgatcaaccgc
gatgatgactttatccaacgagtcctgcgggatatgtacagcgatgaagtgaaccgcatt
gtggtggattcagcccatggggttaagcgggtaaaaagccaactgatgaattggcaaggc
gggaaagcgcccgatggcttactcattgatcaccaccgcgaaaaacagtctgttctggat
tatttccgggtaaatgcggccattcgcgaagctctcaaaccaagggtggagctgccttcg
ggagggtacatcatcattgaacccaccgaagcgctcacggtcattgatgtcaactctggc
tcatttacgaaatcagcaacagcgcgggaaacggtgctctggacgaactatgaagctgcc
acagaaattgcacgacaattgcgtcttcgtaatattggtggggtgattgtcgtagatttc
attgatatggattcccgacatgatcaattgaagttgttagagcatttcaccggaatttta
aaatcagataaggctagaccacagattgcccagttgtcagaattgggcctggtggaattg
acccgtaagcgtcagggccaaaatctttatgaactctttggtaaaccttgtgcccattgc
aatggccttggtcatttagtgcatttacctggggaagaagaagcggttcctctacagctt
agtgtaatgtcttctctttctttgcagtcgggctcccggacgcctggggaaagtcgtcca
gtccttccgggacgtaggacgccgaatactgcccatggccgtcgcctaacttcgcgggtt
tctcggagtaagcttgtcacccaagagcctgtttctggcactgagcctctaaatttggta
catcatcctgattatcaagagcagggtgggagcggcaatagtcgccgacgtcgccggcgt
gctccggaagttgccagtaaacctgtgctccgggatgtgaaagaactgcgggaagacaat
ggtaatgatggtggcgatcgcctccagcaaaatgaaccccaagaatccaaagtcgtcaca
ccagaaaacaacaataatacgccggctccacgctttgagcgccgcgagcggggccgcttc
cgtcgggatgaacccaaagaaacgattcaagtggaaatgacggagcaggaaaaaagcctc
tatgcccttattggggtgtcgcctctggttcgtctagatcccgccatcaaaaaagatccc
cgttcaaccattgtgcaaattgtcagccctggaagccttgatgccgcccaggaagaagct
gcagtgacgccggaaaaaacaaaatctgaagccaccgagcttgagcctgttgagtctgaa
cccaaccaacctcaacagttagatctcacccatttagccaccgcgaaaaagcaggaactt
tcgtctgccaccagcggtgagtcaacgccacaggtggccactgtccccgcagtaacacct
gaaaataatgccgaggaagaggccccggttggccgccggcgccgccgtcgtcgctcttcg
agcagcaattaa
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