Parasynechococcus marenigrum: SYNW0613
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Entry
SYNW0613 CDS
T00144
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
syw
Parasynechococcus marenigrum
Pathway
syw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYNW0613 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syw03021
]
SYNW0613 (rpoB)
03400 DNA repair and recombination proteins [BR:
syw03400
]
SYNW0613 (rpoB)
Enzymes [BR:
syw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYNW0613 (rpoB)
Transcription machinery [BR:
syw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYNW0613 (rpoB)
DNA repair and recombination proteins [BR:
syw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYNW0613 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CAE07128
UniProt:
Q7U8K4
LinkDB
All DBs
Position
592422..595715
Genome browser
AA seq
1097 aa
AA seq
DB search
MSSSAIQVAKTATYLPDLVEVQRASFKWFLDLGLIEELESFSPITDYTGKLELHFIGSEY
RLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEMDKNGRRTYNASVIPNRGAWLKFETDKNSLLHVRVDKTRK
INAHVLMRAMGLSDNDVLDKLRHPEFYKKSIDAANDEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQTRFFDPKRYDLGRVGRYKINKKLRLTIPDTVRTLTHEDVLSTLDYLINLEL
DVGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNEYGFIETPFWKVENGVVIKDGDPIYLSADREDE
VRVAPGDVATESDGRIKADLIPVRYRQDFEKVPPEQVDYVALSPVQVISVAASLIPFLEH
DDANRALMGSNMQRQAVPLLRPERALVGTGLETQVARDSGMVPISRVNGTVIFVDATAIV
VQDEDGQEHTHYLQKYQRSNQDTCLNHRPIVRCGDQVIVGQVMADGSACEGGEIALGQNV
LIAYMPWEGYNFEDALLVSERLVTDDLYTSVHIEKYEIEARQTKLGPEEITREIPNVAEE
SLGNLDEMGIIRVGAFVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PGTERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDICLNPLGVPSRMNVGQVFELLMGWAASNLDSRVRIVPFDEMHGAE
MSQETCEAFLKEAAKQPGKAWVYNPDDPGKLVLRDGRTGQPFDQPVAVGYSHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVYTDEGKEVDLMQDVNPRRST
PSRPTYESLGVADYDED
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagcgcgattcaggtcgccaagaccgccacttatctccccgatctggtggag
gtgcagcgggccagcttcaagtggttcctggatctgggcctgatcgaggagctggagagc
ttctcccccattaccgactacaccggcaagctggagctgcatttcatcggtagcgagtac
cgactgaagcgccctcgtcacgatgtggaagaggcaaaacgccgtgatgcaacctttgcg
tcgcagatgtatgtgacctgccgcctggtaaataaagagaccggtgaaatcaaggagcag
gaggtcttcatcggtgaactgccgctgatgaccgagcggggcaccttcatcattaatggt
gctgaacgcgtgatcgtgaatcagatcgtgcgcagccccggtgtctatttcaaggatgaa
atggacaaaaacggacgacgtacatacaacgccagcgtcatccccaaccgcggtgcctgg
ctgaagttcgaaaccgacaagaacagccttctccacgtccgcgtcgacaagacccgcaag
atcaacgcccacgtgctgatgcgtgccatgggtctgtcagacaacgacgtgctcgataag
ttgcgtcacccggagttctacaaaaagtcgattgatgccgcgaatgatgagggcatcagc
tcggaagaccaggccctgctggagctttacaagaaactgcgtcctggtgaaccaccctcg
gtgagtggcggtcagcagctcttgcagacccgcttcttcgaccccaagcgctacgacctc
ggccgggttggtcgctacaagatcaacaaaaagctccgcctcaccatccccgacacggtg
cgcaccctcacccatgaggacgtgctctccaccctcgactatctgatcaacctcgaactg
gatgtcggtggcgccagcctcgacgacatcgatcacctgggcaaccgccgtgttcgttcc
gtgggcgagctgctgcagaaccaggtgcgggtgggcctcaaccgcctcgagcgaatcatc
aaggagcggatgacggtcggcgagaccgattcgctcaccccggcgcagctggtgaacccc
aagccactggtggcggcgatcaaggagttcttcggctccagccagctgagccagttcatg
gatcagacgaaccctctggcagagctgacccacaagcgccgcatctctgcccttggaccg
ggcggtctcacacgggagcgcgccggctttgctgtccgtgatattcacccctcccactac
ggccgtctctgcccgatcgagacgccggaaggccccaacgccggtttgatcaactccctg
gccacccacgcccgggtgaatgagtacggcttcatcgagaccccgttctggaaggtggag
aacggagtggtgatcaaagacggtgatcccatctacctgtctgctgaccgtgaggacgaa
gtgcgggtggcccctggtgacgtcgccaccgaatccgatggacgcatcaaggccgatctg
attcctgttcgctaccgccaggacttcgagaaggtgccgcctgagcaggtggattacgtc
gccttgtctccggttcaggtgatttcggtcgcggcttcccttattcccttcctggagcac
gacgacgccaaccgcgccctgatggggtccaacatgcagcgccaggctgtgcccctgctg
cgtcctgagcgtgccctggtggggaccggtctcgagacccaggtggcccgtgactccggc
atggtgccgatctcaagggtcaacggcaccgtgattttcgtggatgccaccgccatcgtc
gttcaagacgaggacggccaggagcacacccattacctgcagaaatatcagcgctccaac
caggacacctgcctcaaccaccgtccgatcgttcgttgcggcgatcaggtgatcgttggt
caggtgatggcggatggctccgcctgcgagggcggtgaaatcgccctgggtcagaacgtg
ctgatcgcttacatgccctgggagggttacaacttcgaggacgccttgctggtgagcgag
cgtttggtcacggacgacctctacacctcggtgcacatcgagaagtacgagatcgaagcc
cgtcagaccaagctcggaccggaggagatcacccgcgagatccccaacgtcgctgaggag
agtctcggcaaccttgacgagatgggcatcatccgcgtcggtgccttcgttgagagcggc
gacatcctggtgggcaaggtcacgccgaaaggcgagtcggaccagccgccggaagagaag
ctgctgcgggcgatcttcggtgagaaggcccgcgacgttcgcgacaactccctgcgggtg
cccggtaccgagcgtggacgtgtggtcgacgtacggatctacacccgtgagcagggggat
gaactgcctcccggcgccaacatggtggtgcgggtctatgtggcgcagcgccgcaagatc
caggtgggcgacaagatggccgggcgccacggcaacaagggcatcattagccgcatcctt
ccccgggaggacatgccctacttgccggacggcacccccgttgacatctgcctcaaccct
ctgggtgttccgagtcggatgaatgtcggtcaggtgttcgagctgctgatgggctgggct
gcatccaacttggattcccgggtccggatcgtgccgtttgacgaaatgcatggtgccgag
atgtcgcaggaaacctgcgaagcctttctcaaagaagcggccaagcaaccaggtaaggcc
tgggtgtacaaccccgacgaccccggcaagctggtgctgcgtgacggccggacaggtcag
cccttcgaccagcctgtggccgtgggctattcacacttcctcaagttggtgcacctggtg
gatgacaagatccacgcccgctccaccggtccctactccctggtcactcagcagcccctg
ggtggtaaggctcagcagggcggtcaacgtcttggtgagatggaagtgtgggctctcgag
gcctatggcgctgcctacacccttcaggaactgctcaccgtcaagtccgacgacatgcag
ggtcgcaacgaggcgctcaacgccatcgtcaagggcaagccgatcccccgccccggcacg
ccggaatccttcaaggtgctgatgcgcgaactccagtccctgggtctcgacatcgcggtg
tacaccgatgaaggcaaggaggtggatctgatgcaggacgtgaacccacgccgcagcact
ccaagccgtcccacctacgaatccctcggcgtcgcggattacgacgaggactga
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integrated database retrieval system
