Tachyglossus aculeatus (Australian echidna): 119932172
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Entry
119932172 CDS
T10703
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tacu Tachyglossus aculeatus (Australian echidna)
Pathway
tacu03008
Ribosome biogenesis in eukaryotes
tacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tacu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119932172 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
119932172 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tacu03019
]
119932172 (XRN1)
03009 Ribosome biogenesis [BR:
tacu03009
]
119932172 (XRN1)
03016 Transfer RNA biogenesis [BR:
tacu03016
]
119932172 (XRN1)
03036 Chromosome and associated proteins [BR:
tacu03036
]
119932172 (XRN1)
Messenger RNA biogenesis [BR:
tacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119932172 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
119932172 (XRN1)
Ribosome biogenesis [BR:
tacu03009
]
Eukaryotic type
Pre-60S particles
RNases
119932172 (XRN1)
Transfer RNA biogenesis [BR:
tacu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119932172 (XRN1)
Chromosome and associated proteins [BR:
tacu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119932172 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
119932172
NCBI-ProteinID:
XP_038607040
LinkDB
All DBs
Position
1:95529184..95650501
Genome browser
AA seq
1753 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKDHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FSDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVAIYLSGHETPGEGEHK
IMEFIRSEKAKKDHDPNTRHCLYGLDADLIMLGLTSHESHFSLLREEVRFSGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKSKISFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMTTLPELGGYINENGHLNLPRFEKYLVKLSDFDREHFNEVFVDLKW
FESKVGNKYLNEAAGIAAEEAKNYKQKKLKGQENSMCLAALNKTEGEATTSKNVLEDEPE
DDDLFETEFRQYKRTYYMTKMGVEVVSDEFLADQAECYIQAIQWILHYYYHGVQSWSWFY
PYHYAPYLSDIHNIKEFKIQFELGKPFMPFEQLLAVLPAASKDLLPVCYQHLMTSEDSPI
IEYYPTDFKTDLNGKQQEWEAVVLIPFIDENRLLQAMEPCNKNLKKEEENRNRHSECLMC
SYDKELEFKYLSPWPEKFPAIERCHTRYKLISLDAWHVDISHNNITKVDQKALYFCGFPT
LKHIKHKFYLKKAGVQVFQQSSRGENMLLEIHVNEQPSELKIENVAASVLGKSVFVNWPH
LEEARVVAVSDGETKFSLEEPQGTQKLYLGKTAPPTKVVHIGDKGQSIWIKDIQGISEHY
QRRKGIIINETSVVVYAQLLTGRKYQLSQNGEVHLEKQWSKQVLPFVYQTIVKDISAFDS
RCSKIKTLDDLFPLRSTVFMLGSSYYGCSGEVQDSGDVISEGRIRVVFNIPWEPHLDALI
QNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGNEWTYSSAVEQLLAEYFERVPELFSFVSKNGQEDVFYEDDIWPGEDE
NGAEKVQEIVTWLKTHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKTNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGASREADVLFE
VLFDEEFHGGLTIRCSPARGYRLPTSALINLSHGNRSETVNQKLTAIVKPQPAVNPYSAY
SSDSSTYPQKAHLGGLNHSPRSLFVPTRIPGKDDDEFCSIWQSLQGSGKPQHFQQNSQEK
GAILPQEVKRGSTAPFHKPGFNDSSIKGQQKKHDSFKKYKEDCKVAKNEGHSHKILNKQT
FGGAPKYNVKLLKRNESPGTSEIQKAVSDDPKMHGKADTGLENYLGSLKVSTGGEVQSPR
REEQAQSEEHLSPQSFAMKGTQMLKEILKIDGSDTGESRNEAKPGAGELPSSGRRHSHGP
PQPKQTKKLAAHMPKPHGSGGHHHPPAVDALGRPVVSQQQAAMSTPVVELSRLCSRMGMP
QPDFSFLRTSQTMTICQVKLPNGLLINGPQCHSENEAKERAACFALQQLNPLGVNFAFPP
PMFPTYPPAVPHGTIPPVFPQTHGWDHYGSNIAFGAANLLPPSPHIFSSVPWGAPGPVPG
KAYHRAAYPGSGSLAGAGPVGPHNQFIPLQVTKQRAANRKNWESREAPSPSQPAPTKAER
PGPPDAAGKSTPQDRPSTSSLKSPPNPSPAASFPDKVAPPSSGRGRDKATPTSSSRRKPR
KLAVNFGVPKPCE
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccccaagttttaccggtggatctcggagcggtacccctgcctcagcgaggtg
gtcaaggaccatcagattccagaatttgacaacttgtacctggatatgaatggaatcatc
caccagtgctcccaccctaatgatgatgatgttcacttccgaatttccgatgacaagatc
ttcagtgacatcttccactacctagaggtgctctttcgcatcatcaagcccagaaaagta
ttctttatggcagtcgatggggtggctccaagagcgaaaatgaaccagcaacgtggacgt
cgttttaggtcagcaaaagaggcagaagacaaaatcaaaaaggctatagaaaagggagag
accctccccacagaagccaggtttgattccaactgtattacaccagggactgaatttatg
gccaggttacatgaacatctgaagtattttgtaaatatgaagatttctacagacaagtca
tggcaaggagttgccatctacttatcaggccatgagactccaggagaaggagagcacaaa
atcatggaatttatcagatctgagaaagcaaagaaagaccatgatccaaacaccaggcac
tgcctttatggtttagatgctgacttgataatgcttggattaaccagtcatgaatcacat
ttctctcttttaagagaagaggttcgatttagtgggaaaaaaacacaaagagtttgtgca
ccagaagaaaccacatttcacctcctgcacttgtctttaatgagagaatatattgactat
gaattttcagtattaaaaagcaagatttcttttaagtatgacattgaaaggataattgat
gattggattttaatggggtttctggtcggcaatgattttatccctcatctacctcatttg
cacattaatcatgatgcactgcctcttctttatagaacgtatatgaccaccttgccagaa
cttggaggttacattaatgaaaatgggcatcttaatttaccacgttttgagaaatacctt
gtgaaactgtcagattttgaccgtgaacacttcaatgaagtctttgttgacctaaaatgg
ttcgaaagcaaggtcgggaataaatacctcaatgaagcagcaggtattgcagcagaagaa
gctaagaactacaagcaaaagaaattaaagggtcaggaaaactccatgtgtttggctgct
ttaaacaaaacggagggtgaagcgacaacttctaaaaatgtcttggaagatgagccagaa
gatgatgacctgtttgaaacagagtttagacaatacaagagaacgtattatatgacaaag
atgggcgtagaagtagtttcagatgaatttctggctgaccaggctgagtgttacatccag
gcaatacagtggattttgcactattactaccatggagtccagtcctggagttggttttat
ccttatcattatgcaccttatctgtcagacattcataacattaaggaattcaaaatccag
tttgaattaggaaaacctttcatgccctttgaacaacttcttgctgtcctcccagcagcc
agcaaagatttgctccctgtgtgttaccagcacctgatgacaagtgaagactcgccaatc
atagagtattatccgactgattttaaaaccgacctgaatgggaagcaacaggaatgggaa
gcggtagtattgatccccttcattgatgagaaccgattactgcaagccatggagccttgt
aacaagaacctgaaaaaagaagaagagaatagaaataggcacagtgagtgtctgatgtgc
tcttacgacaaagagttagagttcaaatacctctcaccatggcccgaaaagttccctgcc
atagaaagatgtcacacaaggtataaactaatatctctagatgcttggcatgtagatatt
agccacaacaacataactaaagttgaccagaaggcattatatttctgcggttttcccact
ctgaagcacatcaaacataagttttatttgaagaaggctggggttcaagtattccagcag
agcagccggggagaaaacatgctgttggaaatccatgtgaatgagcaaccaagtgaactt
aaaatagagaatgtagccgcatcagtgcttggcaagtctgtttttgttaactggccccac
cttgaagaagccagagtcgtagctgtatcagatggagaaactaagttttccttagaagag
ccccaaggaacacagaagctttatttggggaaaactgctcccccaaccaaagtggttcat
atcggtgataagggtcagtctatttggataaaggacatccagggaatttcagaacactat
cagaggagaaaaggaataataataaatgaaacttctgtagttgtgtatgctcagttgcta
actggtcggaaatatcaattaagtcaaaatggtgaagttcatctggagaaacaatggtca
aagcaagttcttcccttcgtttatcaaactattgttaaggatatcagtgcgtttgattct
cgttgctccaaaatcaaaaccttggatgacctgtttccccttagaagcactgtcttcatg
ttgggttcttcctactatggctgctcaggagaagttcaggattcaggcgatgtgatctca
gaaggaaggattcgggtggttttcaacattccgtgggagccccatcttgatgccttaatt
cagaaccagcataaatattctataaagtacaatcctggatacgttttggccagtcgtctt
ggagtgagtggataccttgtttcaaggtttacgggaagtatttttattggaagaggatct
aggagaaaccctcatggagatcacaaagcaaatgtgggcttgaacctgaaattcaataaa
aagaatgaagaggtccccggctacacaaagaaggttggaaacgaatggacatattcctct
gcagtagaacagcttcttgctgagtattttgagagggtcccagaactatttagttttgta
tcgaaaaatggccaagaagatgtgttttatgaagatgacatttggcctggggaagatgag
aacggtgctgagaaagttcaagaaattgttacctggctaaagactcatcctgtgagcact
ttgtctcgttcatcttgtgatttgcaaattctggatgcagctattgttgagaaaatagaa
gaagaagtagagaagtgcaagcaaagaaaaactaataagaaggttcgcgtcacagtgaag
cctcatttactatacaggccgttggaacagcagcacggagtcattcctgatagagatgca
gaattccgtctttttgaccgtgtcgtaaatgtgagagagaacttttccgttcccgttggc
ctccgaggcaccatcatagggattaaaggagctagtagagaagcagatgtgctctttgaa
gtattatttgatgaagaattccatggaggtttaacaataaggtgctcccctgccagaggt
tatcgcctgcccaccagtgccttaattaacctttctcatggaaatcgctctgaaacggta
aatcagaaactgacagccatagtgaaaccccagccagctgtgaatccctacagtgcatac
tcatcagattcatccacatatcctcagaaggcacatctaggaggtctcaaccattctcct
cgctccctcttcgttcctactcgaatacctggaaaagatgatgatgaattttgcagcatc
tggcagtcattacagggctcaggaaagcctcagcattttcagcaaaattcacaagagaag
ggtgccattctacctcaagaagtaaagcgaggctccactgctccatttcacaaaccaggc
ttcaatgacagcagcattaagggtcagcagaagaagcatgactcatttaaaaaatacaaa
gaagactgtaaagttgcaaaaaatgaaggtcactcacataagatattgaataagcagact
tttggaggagctcctaaatataacgttaaactgttaaaacggaacgagagcccaggtact
tctgaaattcaaaaggctgtgtctgatgatccaaaaatgcatggaaaggccgacactgga
cttgaaaactacctcgggtccttgaaagtctcgacgggcggcgaagtgcagtcgccccgc
agggaagagcaagcccagagtgaggaacacctgtctccccagtccttcgctatgaaagga
acacagatgctgaaagaaatcctgaaaatcgatggctctgacaccggagagagcaggaat
gaagcgaagccgggagccggtgaacttccttcttcgggcagaaggcattcacatggacct
ccccagcccaagcaaaccaagaagttagccgctcacatgcccaagcctcatggttccgga
ggccatcaccaccctccagctgtggatgcgttgggccgccccgtcgtcagccagcagcag
gctgccatgtctacccctgtggtcgaactctctcgcctctgttcccgcatgggaatgcca
cagcccgacttctccttcctcagaacgtctcagacgatgaccatctgccaggtcaaactg
cccaacggcttgctcatcaacgggccgcagtgtcattcggaaaatgaagccaaggagaga
gcagcgtgctttgctctccagcagttgaaccctttaggagtgaattttgcctttcctccg
ccgatgtttccaacttacccacctgctgtaccgcatggaaccattcctccagtctttccc
caaactcacggctgggaccactatggaagcaacatagcctttggggcagctaaccttctg
ccgccctcgccgcacatcttcagttcggtgccgtggggagctccggggccagttcctgga
aaagcgtatcaccgggcagcctatcccgggagcgggtcactcgcaggagccgggcccgtg
ggcccgcataatcagttcatccctctgcaggtgacaaagcaaagggcggccaatcggaag
aactgggagagcagggaggcccccagcccttctcagcccgccccgaccaaagccgagcgg
cccggccctcctgacgccgccggtaaatccacaccccaggaccggccttcaacttcgtcc
ttaaagtcgcccccaaatccttccccggccgcttcctttccggacaaggtagcccctccc
agctcgggacggggccgggataaagcgaccccaacctcttcttccaggagaaaacccagg
aaattagctgtcaacttcggagtccccaaaccctgcgaatga
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integrated database retrieval system
