Tachyglossus aculeatus (Australian echidna): 119942010
Help
Entry
119942010 CDS
T10703
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
tacu Tachyglossus aculeatus (Australian echidna)
Pathway
tacu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tacu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
119942010 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tacu03000
]
119942010 (KDM2B)
04121 Ubiquitin system [BR:
tacu04121
]
119942010 (KDM2B)
03036 Chromosome and associated proteins [BR:
tacu03036
]
119942010 (KDM2B)
Enzymes [BR:
tacu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
119942010 (KDM2B)
Transcription factors [BR:
tacu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
119942010 (KDM2B)
Ubiquitin system [BR:
tacu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
119942010 (KDM2B)
Chromosome and associated proteins [BR:
tacu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
119942010 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
119942010 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
DUF7885
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
119942010
NCBI-ProteinID:
XP_038618583
LinkDB
All DBs
Position
21:complement(23709663..23868693)
Genome browser
AA seq
1296 aa
AA seq
DB search
MEAEKESGRRLRCIGRQRYDENEDLSDVEEIVSVRGFSLEDKLRNPRYQGDFVHSMEGKD
FNFEYVQKEALRVPLIFRNKDGLGIEMPDPDFTVRDVKLLVGQGSFCWPQRSRRMVDVMD
VNTQRGTEMSMSQFVRYYETPEAQREKLFNVISLEFSHTKLENVVKRPNVVDLVDWVDNM
WPQHLKERQTDATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFQGGKIFW
LIPPTLHNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGNTFFIPSGWIHAVYTPVDS
LVFGGNILHSFNVPMQLRIHEIEDRTRVQAKFRYPFYYEMCWYVLERYVHCLTRRSHLTQ
ECQRESMLVDATRKPSIDGFSSDSWPEMEEESCELHPREEKEESVDKVPKPPADSSSSPN
ITPSEGQEPAGKKPKAPVMRYLKRTLSNESDDSIKSTTPSDYPKTPTGSPATELSTKWTH
LTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNVLKEHADDDQNLAITGMP
VVSWPKKTAKNRAVGRPKGKVGPGSAVKLAANRTTAGARRRRTRCRKCEACLRTECGECH
FCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMEC
SICNEIIHPGCLKRKESSCSWLEEEGLYPPWRLAQYLVKESDGVVNDELPNCWECPKCNH
AGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGLDPAKRKGECEEAVRRKSEEH
VKKPPADGILRRKSDEVHLRRKRKFEKPQELTTRKRLKLGKEEKLFKKKRRSWKATEDRA
ALANKPLRRFKQEPEEDLPEAPPKSKESDQSRSSSPTAGPSTEGAEGPDKKKLKIRRKRR
LPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEPKRTLSGGERLHRFSKG
LNGTPRELRHQLVPSLRTTPRVIARPPPSLSPPKCIQMERHVIRPPPISPPPDSLPLDDG
AAHVMQREVWMAVFSYLSHSDLCVCMRVCKTWNRWCCDKRLWTKIDLNHCKSITPLMLSG
IIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIAVSALCSSSCPLLRTLDV
QWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIAELRLAGLDITDASLRLIIRHMPLL
SRLNLSYCNHVTDQSINLLTAVGTTTRDSLMEINLSDCNKVTDQCLSFFKRCGNICQIDL
RYCKQVTKEGCEQFIAEMSVSVQFGQAEEKLLQKLS
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagaatctggaagaagattgcgctgcatcggccggcagagatacgac
gagaacgaggacctgtcggacgtggaggagatcgtcagcgtccggggcttcagcctggag
gacaagctgcgcaacccacggtaccagggggacttcgtgcacagcatggaaggaaaagat
ttcaacttcgagtacgttcaaaaagaagctctcagggtgcccctgatcttccgaaataag
gatggcctgggaattgagatgcccgaccccgatttcaccgtccgagatgtgaagctttta
gtgggacaaggaagtttctgttggccacagaggagccggcggatggtggacgtgatggac
gtgaacacgcagagaggcacggagatgagcatgtcccagtttgtgcgctactatgaaacc
cctgaggcccagcgggagaaactcttcaatgtcatcagcctggagttcagtcacaccaag
ctggagaatgtcgtcaaacggcccaacgtggtggacctggtggattgggtggacaacatg
tggccccagcatctgaaggagaggcagacggacgccaccaacgccatcgctgagatgaag
tatcccaaagtcaaaaagtactgtctgatgagtgtgaaaggctgcttcactgacttccac
attgactttggaggcacctctgtttggtaccacgtttttcagggtgggaagatcttctgg
ctgatcccaccgaccctgcacaacttggagctgtatgaagagtgggtgttgtcgggcaag
cagagcgacatcttcctgggagaccgggtggaacggtgccaaagaattgagctgaaacag
gggaacacattctttatcccctcaggctggatccatgctgtctacacccctgtagattct
ctggtctttggtggaaacatcctacatagctttaatgtgcctatgcagctgcggattcat
gagattgaagacagaacgcgggtgcaggccaaattccgttaccctttctactatgagatg
tgctggtatgtcctggagaggtacgtgcactgtctgacccgccgatcccacctcacgcag
gagtgccagagagaatcaatgctcgttgatgcaacaagaaaacccagcatagacggcttc
tcatccgattcctggccggagatggaggaagaatcttgcgagctgcatcctcgggaggag
aaagaggagagcgtggacaaagttcccaagccgccggccgacagctcctcctcccccaac
atcacaccctccgaaggtcaggagcctgccgggaagaagcccaaagccccagtcatgcgg
tacctcaaaaggactttgtcgaacgagtcggacgacagcatcaaatccaccacgccctcg
gactatcccaaaacccccactggatccccggccactgagctctcgaccaaatggactcat
ctcacggagtttgaactgaagggcctgaaagctttggtggaaaaactcgaatccctgcca
gagaacaagaagtgtgtccctgagggcattgaggatccacaggcactcctggaggacatg
aagaatgtgctgaaggagcatgctgatgatgaccaaaaccttgcaatcaccggaatgccc
gtggtctcctggcccaagaagacagcaaagaaccgggcggtcgggcggccgaaggggaaa
gtgggccctggctcggcagtgaagttggccgccaaccggacgacggcaggggcgcggcgg
cggcggacgcgatgccgcaagtgcgaggcctgtctgcgcaccgagtgtggagagtgccac
ttctgcaaagacatgaagaagtttggggggccagggcggatgaagcagtcgtgcatcatg
cggcagtgcatcgcaccagtgctaccgcacactgcagtgtgcctggtgtgtggagaggcc
gggaaggaggacaccgtggaggaagaagaaggcaagtttaacctcatgctgatggagtgt
tccatctgcaatgaaatcatccaccctggatgccttaagcgaaaggagagcagctgttcc
tggctggaggaagaaggactgtatccgccctggcgcttagcacagtacctggtgaaggag
tcagacggcgtggtcaacgatgagctgccaaactgctgggagtgtccaaagtgcaaccat
gccgggaaaaccgggaaagcgtacaagcaaaagcgcggccctggtttcaagtatgcctcg
aacctgccgggctcgctgctcaaggagcagaagatgaaccgggacaacaaagaggggctc
gatccggccaaacggaaaggggagtgtgaggaggcggtgcgtcgcaagtcggaagagcac
gtcaagaagccgccggcggacggcatcctgcgcaggaagtctgatgaggtgcacctcagg
aggaaacggaaatttgagaagccccaggagctgaccacgcggaagcggctaaaactcggc
aaggaggagaagcttttcaagaaaaagcggcggtcctggaaggccacggaggacagggcg
gccctggccaacaaacccctccggcgctttaagcaggagccggaagaggacctgcccgag
gcacccccgaagagcaaggaaagcgaccagtcccgttccagctccccgacggccgggccc
agcacggagggcgccgagggccccgacaagaagaagctgaagatccggcggaaacggcgg
ctcccgaacaaggagctgagcaaggagctgagcaaggagctcaaccaggagatccagaag
acggagaacagcctggccaacgagaaccaccagcccatcaagtcggagccggagagcgag
aacgaggagcccaagcggaccctgagcggcggcgagcggctgcaccgcttcagcaagggc
ctcaatgggaccccccgggagctccggcaccagctggtccccagcctgcggaccaccccc
cgcgtcatcgcccggccccctccctccctctcgccccccaagtgcatccagatggagcgc
cacgtcatccggccgccccccatcagccccccgcccgactcgctgccactggacgacggg
gcggcccacgtcatgcagcgggaagtgtggatggccgtcttcagctacctcagccacagc
gacctgtgcgtctgcatgcgggtctgcaagacctggaaccgctggtgctgtgataagcgg
ttgtggaccaaaatcgacttgaaccattgcaaatccatcaccccgttaatgctcagtggc
attatccgccggcagcccgtcaccctggacctcagctggacaaacatctccaaaaagcag
ctgagctggctcatcaataggcttccaggacttcgggacctgctgctgtccggctgctcg
tggatcgccgtgtcggcgttgtgcagttccagctgtcctctgctccggaccttggacgtc
cagtgggtggaaggactaaaggatgcccagatgcgggatctcctgtctccaccgacggac
aatcggccaggtcagatggacaatcgaagcaaactgcggaacatagcggagctgcgcctg
gccgggctggacatcacggacgcctccctgcggctcatcatccgccacatgcccctcctc
tccaggctcaacctcagttactgtaaccacgtcaccgatcagtccatcaacctgctgacc
gccgtggggaccaccacccgggattccttaatggaaattaacttatcagattgcaataag
gttactgaccagtgcctgtccttctttaaacgctgtggaaacatctgccagatcgacctg
aggtactgcaagcaggtaaccaaggagggctgtgagcagttcatagcggagatgtcagtg
agcgttcagttcgggcaagcggaagaaaaactcctgcaaaaactgagttag
DBGET
integrated database retrieval system
