Triticum aestivum (bread wheat): 123127893
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Entry
123127893 CDS
T07757
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
taes
Triticum aestivum (bread wheat)
Pathway
taes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123127893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taes03019
]
123127893
Messenger RNA biogenesis [BR:
taes03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123127893
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123127893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
123127893
NCBI-ProteinID:
XP_044403688
LinkDB
All DBs
Position
1B:complement(412284943..412305331)
Genome browser
AA seq
2397 aa
AA seq
DB search
MIPFNSAVADEVRSLVQGADDSTVDSIYRELCQLADCSPDGCILLLQVCLDEVLLNAGVA
KNSQSKQDLLSTVFRYCLDKPYFSTCFCEALRTLSVSDVFLETLSNELDLSRAERVGIGL
ALSDSENIGLNLKGQRFSIAQIEELCNNPAQSISNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLFKVKEMPFHVPVLVQESNARPASSHMEMYIGSFDDDFDSLLSEIGKEISMADIITE
LGYGCTADIAHCKDTLSLFEPLDDLGISKLLGAVVTTATGLGEAQNTYSTFISAFGNSQT
NDSFQSTAWDIDVLVDSINEIAPRTNWTSVMESLDHEGFSIPDEGAFRLLMSIYSRACKD
PFPLHAICGSLWKNLDGQLSFLKHAVAAPADTFTFKHSSRKLVFPDLASHIQGNQAWYCL
DLLEVLCQLADLGYATLVRPLLDYPLSHCPDVLLLGVSQINTAYNLLQYEVLSCVFPALL
KDTKNSSLMNYLWHLNSSLTLRGFVDAHSDIICLLRTVDICQDLKILSAVLDSTPLAFSI
RLATVSFRNDNSNLEKWMTEKLSAHREAFIEECIKFLKESVVNTTHDAAEGVIQQPQATI
TNICWESCPLFMKVLQSHSGQLLTNQLVDDLNRVEAAYESRTQGSLGRDIPTSEGGSDDI
EAQANIYFHQMFSEQISVDAMIQMLARFKESTNKRELAIFNCMISNLFEEYKFFPKYPDT
QLKLAAVLMGSLIKHQLVAHLGLGVALRSVLDALRKSIDSKMFMFGTTALEQFMDRVIEW
PQYCNHILQISHLRGTHAELVSAIEQALAKISSSQNEPNIGNIFSVDPHGSGSPSIGNTE
VSDPSWQFTNPTATQLERSPSFPLQQRYQGFLGERSKGSTNSVQAKNILSISQPIASTPG
DLSMAPKATAPPSLQASPHHSATISASSQSTNFLRPRSSAPSGTRSPYTTGFGAALNIET
LVAAAERRDTSVEAPPSEVQDKIFFMINNISNSNLDAKAREFNEVSQDQYYPWFAQYMVM
KRASIEPNFHDLYLKFFDKVNSKTLNKEMVKATYENCKALLQSDLIKSSSEERSLLKNLG
SWLGKLTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYRPPNPW
TMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRTRQLEGNPDFSN
KDVTASQIPVVAEVSSGMIPAKNVAEVQPELTSTSRATSIPNMLNQYAPPLRLPPNSMVE
DDKVALIMPDQVSPSQTPSPLPALFTLSQLMAAIPRADIYFRINEKLSSLGSLQYSKIMD
VALDKAIKEIIGPVIQRSVTIATRTTKELILKDLAMESDDSAVSRAAHLMVGTLAGSLAH
VTSKEPLRVALSSHLRSLIQNLNNNSETTEQIVHILINDNLDLGCALIETVATHKAVEMI
DGEIKQPFSQLRRQKELLGSGYYDAFPYTQGLARVPDALRPKPTGHLCATQQRVYEDFIT
VWHSQSSQNAGATTSATAVTAAPGNSSIPRLYSPNLVQQADLLPEESDHGTTQLLSVSTQ
IGTSDTFAQAGGTTNIASVFPPMSSNDIPVGEQTAGTKDLGCTAPLSPTTAVDRMESVFT
EPLSTDSGLDRYHQVAQKLEALIANDGKDVEIQSVIAEVPDILHRCVKRDEAALLIAQKV
FRSLYENASKSTYVTWLLATLAAIRDVCKLIVKEITGWVIYSEEENKFNLDIVTGLIRSE
ILNVGDYDVHLAKIIDSGRNKNATEFAISLVQTLITQEPSGISELCNVVDALSKLAIRPG
SPESLQQLIEIARSNFKNAASFAAMKDEKVRHATDNKVLSGRPSIYKEENDSAFADAVSF
QDQVAVLFSDWCHICDHPTMGDSAYSHYIVQLQQHGLLKGDDLTDRFFHTLTELAITHAV
VSEQVIAPGGMSQQPAQQLQISYFSIDSYSKLVTLMFKYGVDLGPNKGNLLPKILSITTR
IIQRDAEEKKVSFNPRPYFRLFINLLSELSTADLHDGASFQVLTAFANAFHVLQPLRVPA
WSFAWLELVSHRSFMPRLLLCNSQKGWPFFQRLLGDLFKFMEPYLRNAELGQPIQLLYKG
TLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDL
LAEISVAPRIMSDVEGALKAKQMKTQVDEYLKRPEGSSFLTDLKQKLVLPPNEANVAGTR
YNVPLINSLVVYVGIQAVQQLQHNKANASASAQQMNQSPQVDVFQIETATEVFRNLIVNM
DTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFAEATQDIVQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPRYSFWARSFTRCAPEIERLFESVARSCGGKAAEEGVLADGGH
NT seq
7194 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcaattccgccgtcgccgacgaggtccgctccctcgtccagggcgccgac
gactctaccgtcgactccatctaccgcgagctctgccagttagctgactgcagtcctgat
ggttgcattttactgcttcaagtttgtttggatgaggtgctgctgaatgccggggtggca
aaaaactctcaatcgaaacaagatcttttatccaccgttttcagatattgtctggataaa
ccatacttcagcacctgtttttgtgaagcactgaggactttatctgtcagtgatgttttc
cttgaaacgttgtcaaatgaacttgatctatcgagagctgagagggttggcattggactt
gccctgtcagattccgagaatataggcttgaatctgaaaggccaaagattttcaattgct
cagatcgaggagttatgtaacaatcctgcacagtctatatcgaatgaccaaattcatgat
attgttgtgtttcttcaccagactgatggcctctcgaagcatatggattcttttactaac
attatctccctattcaaagtcaaagagatgccattccatgtccctgtccttgttcaggag
agcaatgctcggccagcttcaagccacatggagatgtacatcggcagctttgatgatgat
tttgattcccttttatctgaaatcgggaaggagataagcatggctgacatcattactgaa
ttgggttatggatgtactgctgatattgcacattgtaaagatacattatcactttttgag
cctctcgatgatttgggaatatctaagttgcttggggctgttgtcactactgccactggt
cttggtgaggctcagaacacatattcaacattcatttcggcttttggcaacagccaaaca
aatgactcatttcagtcaacggcatgggatatcgatgttctcgtggactcaatcaatgaa
attgccccacgaacaaattggaccagtgtaatggaaagcctggaccacgagggtttcagt
atccctgatgaaggggctttccgtctattgatgtctatatattctcgggcttgcaaggat
ccatttccgcttcatgccatctgtgggtcactgtggaagaatttagacgggcaattatca
ttcttgaaacatgcagtggctgccccagcagatacatttacatttaaacattcttccagg
aagctggtatttccagacttggctagtcatatccaaggcaatcaggcttggtactgccta
gaccttttggaggtgttatgccagcttgctgaccttggctatgcaacattagtgcgacca
ctgctggactacccactcagtcattgtccagacgtcttacttcttggtgttagccaaatc
aatactgcatataatctcctccagtatgaagtattgtcatgtgtattccctgctttattg
aaggacactaaaaatagcagtctaatgaactatctctggcatctcaactcttcccttact
ctccgaggatttgttgatgcccattctgatataatttgtcttttgagaactgttgatata
tgtcaagacctaaagatcctatccgctgtccttgattccactcccttagcatttagcatc
agacttgccacagtttcctttcgaaacgataatagcaatctagagaaatggatgactgag
aagttaagtgcacacagagaggcttttattgaggaatgtattaaattcttgaaagaaagt
gtggtcaacacaactcatgatgctgcagagggtgtcatccaacaacctcaagctactatc
acgaatatttgctgggaatcatgtcctttatttatgaaggttcttcagtctcattccgga
cagctattgactaaccaactggtggatgacctaaatagagtggaagcagcgtatgaatca
aggactcaaggttctcttggaagggacattcctacttccgagggaggttctgatgacatt
gaagcacaggcaaatatatattttcaccagatgttttctgaacagataagcgttgatgct
atgatacaaatgcttgcacgcttcaaagagtctacaaacaaaagggagctagcaattttc
aactgcatgatctcaaacttgttcgaagagtacaagttcttcccaaagtatccagataca
cagcttaagctagctgctgttcttatgggctctctcattaaacatcaacttgtggctcac
ctgggacttggagttgctctacgtagtgttcttgatgccctgcgtaaatctattgattca
aagatgtttatgttcggtacgacagcgcttgagcagtttatggatcgtgtaatagagtgg
ccgcaatactgcaaccatatattgcagatctcacatcttcgtggaacacatgccgagtta
gtctctgcaattgagcaggcacttgccaagatatcatcaagtcaaaacgaaccaaatatt
ggcaacatattttctgtggatccgcatggttctggttcaccatctatcggaaacacagag
gtttctgacccatcatggcagttcaccaatccgactgcaacacagcttgaacggtcacct
tcttttccactgcaacagaggtaccagggttttcttggggagaggtccaaaggttctaca
aacagcgtccaagctaagaacattctatctatcagtcaacctattgcttcaacacctggt
gatttgtctatggctccgaaggctactgcaccaccatccttacaagcttctcctcatcat
tctgccactatttcagcttcttcacaatccactaattttctgaggcctagaagttcagct
ccttcaggcactcgatctccatacactacaggatttggagctgctttaaatattgaaact
cttgttgctgcagcagaacgaagagatacatcagttgaggcccctccttctgaagttcaa
gacaagattttcttcatgatcaacaatatttctaattctaatttggatgctaaggcaagg
gaatttaatgaggtttctcaggatcagtattatccttggtttgcacaatacatggtcatg
aaaagggcaagcatcgaaccgaattttcatgacctgtatttgaagttcttcgacaaagtt
aactcaaaaacgttgaataaggaaatggtgaaagctacatatgagaactgcaaggctttg
ttacaatcagatcttatcaaatcaagttccgaagagcggtcattgctaaaaaatctgggt
agttggctaggaaagctcactataggaaggaatcaaacattacgagcgaaggaaattgat
cccaaaattcttatagttgaggcatatgaaagggggctgatgattgcagtcattccgttc
acttcaaagattcttgaaccttgccattcaagtatagcatatcgtcctccaaatccatgg
acaatgggtattcttagcctacttgctgagatctataatctacctaatctcaagatgaac
ctgaagtttgacattgaggtcttgtttaagaacctcagtgtggacatgaaagatgtaaaa
ccatcttctcttcttaaagatcgtactcgtcaacttgaaggaaatccagatttttctaat
aaagatgtcactgcatctcaaataccagtcgttgcagaggtttcctctggtatgatccca
gcaaaaaatgttgctgaagtgcaaccagagttaactagtacctcacgggctactagcatc
ccaaatatgttaaaccagtatgcaccacctcttcgtcttcctccaaacagcatggttgaa
gatgataaggttgctttaataatgcccgatcaggtttcaccatctcaaacgccatctccg
ttacctgctctgtttactcttagtcagcttatggcagcaatacctcgcgcggatatatat
tttagaattaatgaaaagcttagttctcttggctcactgcagtatagcaaaatcatggat
gttgctttggataaggctattaaagaaattataggccctgttattcaaagaagtgttaca
atagctacccgaactactaaggagcttattcttaaggatttagcaatggaatctgatgat
agtgcggtatctcgcgctgcacatttgatggttggcacgctagctgggagtttagctcat
gtaacttccaaggagcctcttcgtgttgctttgtcgtctcatcttcgaagtctcattcag
aacctgaacaataacagtgaaaccaccgagcagattgttcatattctgatcaatgataat
ctagatcttggatgtgcgctaatagagactgttgcgacacacaaggctgttgagatgatc
gatggagaaatcaagcagcccttttcacagctaaggaggcaaaaggagttgcttggttct
ggatattatgatgcttttccttacactcaaggtcttgcacgtgtcccggatgcacttcgt
ccaaagcctactggccatttatgtgctacccaacaacgagtgtacgaggacttcattact
gtatggcacagccagagtagtcaaaatgctggagctaccacttctgctacagccgtgact
gctgccccgggcaattccagtatacctcgactttatagcccaaatttggtacaacaagca
gatctgcttcctgaagagtcagatcatggtaccacgcaactgttaagtgtttccacacaa
attggtacaagtgacacttttgcccaagccggtggaactactaacattgcatctgttttc
ccccctatgtcatctaatgatattccagtgggtgaacaaacagctggaactaaagatctt
ggctgtacggcgcctctttcacctacgactgctgttgaccgtatggaatctgttttcact
gaacccttgagtactgacagcggattagacagataccatcaagttgcacagaagcttgaa
gccttgattgccaatgatggtaaagatgtagaaattcagtctgttattgcagaagttcct
gatattttacacagatgtgttaagcgggatgaagctgcattattgattgcacaaaaggtt
ttcagaagtttgtatgaaaatgcatcaaagagtacttatgtcacatggcttctggcaact
ttagctgcaatacgtgatgtttgcaaacttatcgttaaagagataacaggctgggtaatt
tattctgaggaagaaaataagtttaaccttgacatagttacaggactaattcgttctgag
attcttaatgttggggattatgatgttcatctagcaaagatcattgatagtggaagaaac
aagaatgcaacagagttcgctatatcacttgtccagacattgattacccaagaacccagt
ggcatttctgagctttgtaatgttgttgatgcattatcgaagcttgcaatcaggcctggt
tcacctgaatcattgcagcagttgattgagattgcaaggagtaatttcaagaatgctgct
agctttgctgccatgaaggatgaaaaggttaggcatgcaacggataacaaggttttatct
ggccgtccttcaatatataaagaagaaaatgattctgcttttgcagatgctgttagtttt
caagaccaggttgcagttttattctcggactggtgtcacatatgtgatcatccaactatg
ggtgattcagcatatagtcattacattgtgcagttgcaacaacatggcttgcttaaggga
gatgatttgactgaccgcttcttccatacactcacggaacttgccatcacacatgctgtt
gtctctgagcaagttattgctcctggtgggatgtctcagcagccggcccagcaactccag
atttcgtatttctcaattgattcatattcaaagcttgtgactttaatgttcaagtatggc
gtggatttaggaccaaacaaaggcaaccttcttccgaagattctctccataaccactagg
atcattcagagagacgctgaagaaaagaaagtttctttcaatcctcggccatattttaga
ttatttataaatttgctaagtgagcttagcactgctgaccttcatgatggtgctagtttt
caggttttgactgcatttgcaaatgctttccatgtgcttcaacccttgagagttcctgca
tggagttttgcttggcttgaattggtaagccatagaagcttcatgccgaggttgttgctg
tgcaattcacaaaaaggttggccattcttccagaggctgcttggtgatttgttcaaattt
atggaaccatatctaagaaacgctgagctgggacagcctattcagcttttatacaaagga
actttgagagtgctgcttgttctactccatgactttcctgagttcctctgtgactaccac
ttcagtttctgtgatgtgattcctccaagctgcatccaaatgcgtaatgttattcttagt
gcttttccacgcaatatgagacttcctgatccctctactcctaatttaaagattgacctg
ctagctgaaatttcagtagctccaagaatcatgtctgatgtggaaggtgctttgaaggca
aagcaaatgaagacccaggttgacgagtacctcaagagaccagaaggttcatccttttta
actgatttaaagcagaagttagtgctgcctccaaatgaagcgaatgttgctgggactcgt
tataatgttcccttaattaattcacttgtcgtctatgttggcatccaggctgtgcaacag
ttgcagcataacaaggcgaatgcatcagcttcagcgcagcaaatgaaccaaagtcctcag
gtggatgtttttcagattgaaacagccactgaggtattcagaaatcttatagtgaatatg
gataccgaaggccgttacctcctcctgaacgcgattgctaaccagctacgctatccaaac
aatcatactcactacttctccttcatcattttgtacttgtttgctgaggcaacacaggat
atcgtacaggagcagataactagagttcttttagagcgcctaatagttaatcgtcctcat
ccctggggattacttattactttcattgagctcataaagaatccacgctatagcttctgg
gctcgatcctttacacgctgtgcgccggagattgagaggctgtttgagtctgttgcaagg
tcttgtggaggtaaagctgcggaagagggagttctcgctgatggtggtcactaa
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integrated database retrieval system
