Thermosipho africanus: THA_559
Help
Entry
THA_559 CDS
T00797
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
taf
Thermosipho africanus
Pathway
taf03410
Base excision repair
taf03430
Mismatch repair
taf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
taf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THA_559
03430 Mismatch repair
THA_559
03440 Homologous recombination
THA_559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
taf03400
]
THA_559
DNA repair and recombination proteins [BR:
taf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
THA_559
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
THA_559
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THA_559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
CCDC117
Motif
Other DBs
NCBI-ProteinID:
ACJ75047
UniProt:
B7IG33
LinkDB
All DBs
Position
568326..571253
Genome browser
AA seq
975 aa
AA seq
DB search
MKWELKKFNKELAQKISEELSLPFLTSQLLVTRGYTDFEEIEKFLYPSKKHLRSPFLLKD
MDKAVRYLLEAREKKLPVFVYGDYDVDGITGVATLVTFLSKYGWKVDYYIPNRLDEGYGI
QPQVVEEYFKKGYRVLLSVDCGITSFEAVEKARELGMYVIITDHHTIKDKIPEAHAVVDP
KREDETYPFRDFAGVGVAYKLISAVAQELGIPGDEVDEVLDIVALGTIADMVDLVDENRY
IVKEGLKRLNATNRIGLLQLMKKLNITNISSQDIGYRLAPKLNAAGRLYSAEDAYKLIMT
DNISSAEQLAEMLMGYNFTRQEIENKIFKEAIEKIEHSKIKDLPILIVSGDNWHAGVLGI
VATKLVQKYNKPSLVVSLENGIGRGSGRSVDGVNILEVLSDFASYFEEFGGHPMAIGFSI
KNEKIPELIEAISEKFGNTFFEVDSKIEIDSILEVDDINDEIIDSLRYLEPFGHGNPEPV
FLIKDSIVDRIRFFGNTNSNVRMILKGKNKQTVEGIGFGLRKNYYDIPAIQAFLTSLDVV
ANIRKNGVGPILNILDFKISSIHEEDYNDKYFIYSFTNDWKSQKEEEFKHFGVFDELSQR
YEKVEKYLHIQRPFVLQMDPMTRNAFLMLLMQKGRTLIVNPNNIEALHVDESLSRHSPKD
LSFVNSLNRKISNHVITNAVMIVEEQIPVDDFDFIVLNEIHILSALSTEMYEKLLEKLKK
EKLIITSLYKFDTNIPLYSEERKLNFGLEDRRNSKKTIDYDVDSIAFLFSNYNYVTKFYE
KLITKGYKFKDLVFYSPILEDFQKKAISTLIKKGRIKKLVSSTNSDGLPSMLPNGSEIRL
FDFPLSVKELIDAVSGDSYTILQLYYNEEDAKKRMEHLKKLFPENLENAVKGFFENNIKN
KEEFLNFSNNVSISPKILNQAIKDYKERKKILRNIEREFELRYFERYTMFLLNNSIKDIY
KMIEERDMYDTYLEI
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatgggaattaaaaaaatttaataaggagcttgctcagaagatctctgaggagtta
agtcttccgtttttaacttctcagttattggtaacaagaggctatacagattttgaagaa
attgaaaaattcctatacccatctaaaaaacaccttcgctctccatttttgttaaaagac
atggataaggctgttaggtatttattggaagcaagagaaaaaaagcttccagtatttgta
tatggtgattacgatgtagatggtatcaccggtgtggccacccttgtaactttcctctca
aaatatggttggaaagttgattattacattccaaaccgtcttgatgagggttatggcata
caaccacaagttgtagaagaatattttaaaaaaggctacagagttctcttgagcgttgat
tgcggaataacaagttttgaagcagtagaaaaagcaagagaactagggatgtacgtaatt
ataaccgatcatcatacgatcaaagataaaattcctgaagctcacgctgtggttgatcca
aaaagagaagatgaaacataccctttcagggattttgcaggagttggagtagcatataaa
ttaatttcggctgtcgcacaagaacttggaattccaggtgatgaagttgatgaagtatta
gatattgttgcgctaggaacaatagccgatatggtggatttggtagatgaaaatcgatat
atagtaaaagaaggtttaaagagactaaacgcaactaacagaattggtcttttacaactt
atgaaaaaattaaatattacaaatatatcaagtcaagatataggatacaggcttgcacca
aaattgaatgcagcgggaagactttattcagcagaagatgcttacaaactaataatgact
gataacatttcttctgcagaacaacttgctgaaatgttaatgggatacaactttactagg
caagagattgaaaacaaaatcttcaaagaagcaatagaaaagattgaacattctaaaatt
aaagatctgccaattttaattgtaagcggtgacaactggcatgcaggtgttttaggaatt
gtagccacaaaattagttcaaaaatataacaaaccttctttagttgtatctttggaaaac
ggaattggaagaggctcaggtagaagcgtggatggtgtaaatattttagaagttttatca
gattttgcaagttatttcgaagaatttggaggccatccaatggcaataggatttagcata
aagaacgagaaaataccagaattaattgaagcaatatcagaaaaatttggaaatacattt
ttcgaagtagactcaaaaattgagatagactcaattttagaagttgatgatataaatgat
gaaatcatagattccctaaggtatttggaaccatttggccatggaaatcctgaacctgtt
ttcttaattaaagatagtattgttgatagaatacgattctttggaaacaccaactccaac
gtaaggatgatccttaaaggcaaaaacaaacaaactgtggaaggcattggatttggtctt
agaaaaaactattatgatatacctgcaattcaagcatttcttacatcattagatgttgtt
gcaaatataaggaaaaatggagttggacctattttaaatatcttagattttaaaatttct
tccattcacgaagaagattacaacgataaatacttcatttattcatttacaaatgactgg
aaatcacaaaaagaagaagaatttaaacactttggagtttttgatgagctttctcaaagg
tatgaaaaagttgaaaagtatcttcatatccaaagaccttttgttttacaaatggatcca
atgacaagaaacgcatttttaatgcttttaatgcaaaaaggaagaactttaatagtaaat
ccaaataacattgaggcactccatgtagatgaaagcctctcaaggcactcacctaaggac
ctttcatttgtaaattctttaaatagaaaaatttcaaaccatgttattacaaatgcagtt
atgatagttgaagaacaaattccggttgatgatttcgactttattgtattaaatgaaata
catattttgtcggctctatcaactgaaatgtatgaaaaacttttagaaaaattaaaaaaa
gaaaaattgataattacaagtctatataaatttgacaccaacattcctttatatagtgaa
gaaagaaaactaaactttggccttgaagatagaaggaattcaaaaaagactattgactat
gacgttgattctattgcattcttgttttcaaactataactacgtaacaaaattctatgaa
aaattaattactaaaggatacaaatttaaagatctggtattctacagcccaattttagag
gatttccaaaaaaaggctataagcacacttattaaaaaaggaagaataaaaaaattagta
tcatcaacaaattcagatggacttccttcaatgctccctaatggttcagaaataagactt
tttgattttccactttctgttaaagaattgatagatgcagtttcaggtgattcttatacc
attttgcaactttattacaacgaagaagacgccaaaaaaagaatggaacatctaaaaaaa
ctatttccagaaaacctcgaaaatgcagtaaaaggattctttgaaaataacataaaaaac
aaagaagaatttttgaatttctctaacaatgtatcgatttctccgaagatattaaatcaa
gcaataaaagattacaaagaaagaaaaaaaattcttagaaatattgaacgtgaatttgaa
cttagatactttgaaagatatactatgttcttactaaataattcaataaaggatatttat
aagatgattgaagaaagagatatgtatgatacatatcttgaaatatag
DBGET
integrated database retrieval system
