KEGG   Typha angustifolia (narrow-leaf cattail): 140767509
Entry
140767509         CDS       T11061                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140767509
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140767509
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140767509
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     140767509
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind ARM_Cnot1 DUF3819 CNOT1_HEAT NOT1_connector
Other DBs
NCBI-GeneID: 140767509
NCBI-ProteinID: XP_072963541
LinkDB
Position
9:join(1374906..1375004,1376339..1376639,1376756..1376981,1377094..1377433,1377542..1377655,1377734..1377862,1377952..1378134,1378218..1378409,1379570..1379707,1379837..1379962,1380069..1380313,1380716..1380819,1381534..1381628,1381716..1381952,1382375..1382587,1382776..1382878,1383118..1383212,1383312..1383457,1383554..1383662,1383746..1383892,1384256..1384303,1384383..1384511,1384604..1384843,1384964..1385128,1385221..1385306,1385387..1385492,1385591..1385686,1385816..1385968,1386554..1386733,1386825..1387066,1387148..1387283,1387369..1387491,1388239..1388283,1388376..1388453,1388546..1388662,1389125..1389251,1389463..1389566,1389646..1389774,1389883..1389969,1391481..1391627,1391779..1391919,1392026..1392073,1392176..1392322,1392395..1392456,1393396..1393549,1393646..1393837,1393950..1394054,1394222..1394356,1394984..1395232,1395909..1396016,1396107..1396256)
AA seq 2456 aa
MIPFPSIVSAQIRLLIQSLDDSNFDSIYRELCQLVEYGNDGSILLLQTCLDQLKLNSGET
QNFPLKCSVISDIFRYLLDRPDFSTSFCEALSTTRLSERFLEDLSGTLKLSVSERIGLGL
ALSDSENPDLKMKGQNFCIVQIEELCANPASVSNEKIQEIVAFLYRNEGLSKHMDSFTNI
LSLLQLKGSPFFIPAPNLRSDIHAINSPRHLDIFYETAYSDFEAILAEIEKEMSMADIMT
ELGYGCTINSSRCKEMLSLFDPLNDITISKILGAIARTHTGLEDAQNTYATFCSAVGSSP
ASDLSPLSTWNIDVLVDSINQLAPKTNWKYVMENLDHEGFNVPDEAAFSILMSIYNRACG
DPFPLHAVCGSVWRNAEGQLSFLRYAVSAPPDVFTFAHCSRKLAYVDLLHLTNKQGNQAW
FCLDLLEIFCQLAERGHACSIRTILQYPLTQCPEVLLLGLASINTAYNLLQYEISSLIFP
AMLMDSAKNSIIGNLWHVKPYLVLRGILDTYTDPKCLLRILDICQDLKILTAILDATPLS
FSIKLAAVASQKELIDLEKWLSENLITYKDVFVEECLKFLKEVLIDAANDATESTPQQSR
AAVMNICQETCSVFFKVLQTHSGQLISDQLVEEIKRLQMVSNPKSESAVVTDMITPEGSS
DDIEAEANTYFHQMFSGQLSIDSMVQMLARFKESSDKRELSIFNCMISNLFEEYKFFPKY
PDKQLKLAAVLFGSLIKHQLVTHLALGIALRGVLDALRKSVDSKMFMFGTKALEQFMDRL
IEWPQYCNHILQISHLRVSHSELVAIIERALAKISSSHTESNGGDSVASEQQASGPASAD
SIEASEASWQLMGSTSSQLGRQLSSFQLQQRHQGFLGERLKASTTSVSYSKPPLSQTAQT
SLALTTVDSSTTQKVTPLQSSQASSHHSTNVATTVSSPGFLRPRSLALGMLRQHSPAIGF
GAALNIETLVAAAERRDTVEAPSSEVQDKILFMINNISTSNMDAKAKEFDEVLKEDHYPW
FAQYMVMKRASIEPNFHDLYLKFFDKVNSKVLDKEILKATYENCKVLLGSELIKSSSEER
SLLKNLGSWLGKLTIGRNKSLRAKEIDPKVLIIEAYERGLMIAVIPFTSKILEPCQSSIA
YQPPNPWTMGILGLLAEIYNLPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDKVRQVE
GNPDFSNKDVTSSQPPVIAEVSSGIIPTVNHVELQPEVNSTSRTMNLPNILNQYTAPLHL
ASNTMMEDDKVGALIMPEHVPAAQGMSQVSPSPSPAPSPSPSPFSLSQLLTIIPTADSYI
SINPKLSSLGSQLQYHRIIHLAMDRAVREIISAVIQRSVTIASRTTKELILKDYVMESDD
NVISRSARLMVGTLAGSLAHVTCKEPLRVALTNHLRSLLQALNSNNENNEQIIQILTNDH
LDLGCAVIEDVASQKAVEMIDGEIGPSFAALRKQREGTGSYYDAFTYSQGPFSRVPEALR
PKPGRLSLAQQRVYDDFIKIIWHNQSSQNSSAGPTGQPGMSGSTGNSSVPRAYSSSSVPL
NSSGFSTSQVAPFSSVAQPLDLISEESDRGSSQLPSGHPTQVGTSDTAIQHGGGINSVVS
PFPVSVTSSDLPTVDAPVTTKELGAIVPPSPTAAADRLGTAIPESLLTTGDALDRYQQVA
LKLEALIAKDARETEIQGVVSEVPDIILRCISRDEAALAVAQKVFKSLYENSSNGVHVTS
HLAILAAIRDASKLVVKELTSWVIYSDEEKKFNKEITIGFIRSELLNLAEYNVHLAKLID
GGRNKAATEFAISLVQSFISQDAGVSMSELYNLIDALSKLAMRPGSPESLQQLIEVARNN
VHNAPNLTANKDEKARQLRDKKVISGRNFTNKEEISANEAAAADPPGFQDQVSVLYSEWC
QICEHPVTNDAAYGHYISQLQQSGLLKGDDITDRFFRILTELSVTHSLVSEQVMTPSAMS
LHSPQQIQQLSYIPIDAYAKLVVLILKYSSVDQGPSKSVLLPKILSVTVRAIQKDAEEKK
LSFNPRPYFRLFINWLLDLASPDPLLDSANFHVLTSFANAFHALQPLKVPAWSFAWLELV
SHRSFMPKLLMCNSPKGWPFFQRLLVDLFKFMEPYLRNAELGEPVHFLYKGTLRVLLVLL
HDFPEFLCDYHFSFCDVIPSSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLPEITQSPR
ILSEVDAALKAKQIKAEIDEYLKTRPEGSSFLADLKQRLLLPQNEANLAGTRYNVPLINS
LVLYVGMQAIQQLQSKSAPQLASTQQMSHIPPMDIFLVGAAMDIFQSLIKNLDTEGRYLF
LNAVANQLRYPNNHTHYFSFVLLYLFAETSQSQEIIQEQITRVLLERLIVNRPHPWGLLI
TFIELIKNPRYNFWNRPFTRCAPEIEKLFESVSRSCGGPKAVDDGIVSSVVSDGNH
NT seq 7371 nt   +upstreamnt  +downstreamnt
atgattccgttcccatccattgtctccgcccagattcgcctcctgatccagagcttggac
gattccaacttcgattcgatctaccgcgagctttgccagttggtggaatatggaaatgat
ggaagcatcttattgctccaaacctgcttagatcaactgaaactaaatagtggggagact
caaaactttccgctgaaatgttctgtcatatctgatatatttagatatttgcttgataga
ccagatttcagtacaagcttttgtgaagctttaagtacaacacgattaagtgaaagattt
ctagaggacctttcaggcacacttaaactctcagtatcagagagaattggtcttgggctc
gccttatcagattctgagaatcctgatttgaagatgaaagggcaaaatttctgcattgtt
cagattgaggaactctgtgcaaatcctgcttctgtatctaacgagaaaattcaggagatt
gttgcatttctttaccgaaacgagggcctttctaagcatatggattcttttacgaatatt
ctatctctattgcagttgaaagggagccccttctttattcctgctccaaacctgagaagt
gacattcatgcaatcaactctccaaggcatttggatatattctatgagactgcatatagt
gattttgaggccattttggctgaaatagagaaggaaatgagcatggcagacatcatgact
gaattgggttatggatgtacaattaacagctctcgctgtaaagagatgctctctcttttt
gatcctcttaatgatataacaatttccaagatacttggagcaattgctcgcactcatact
ggtcttgaagacgcacagaatacgtatgcaacattctgctctgctgttggtagtagccca
gccagtgatttatctccattaagcacatggaacattgatgttcttgttgattcaatcaac
caacttgctccaaaaacaaattggaaatatgtaatggaaaatctagatcatgagggcttc
aatgttccggatgaagcagcgttctctattctaatgtccatatataatcgtgcatgcggg
gatccatttccgcttcatgctgtttgtgggtccgtgtggaggaatgcagagggccagtta
tcttttctgagatatgctgtgtctgcaccacctgatgtatttacatttgcacattgttca
cggaagctggcctatgttgatttgttgcatcttacaaataagcaaggcaaccaggcttgg
ttttgtcttgatctcctggaaatattttgccaacttgctgagcgtggccatgcctgttca
attcggacaatactgcaataccctcttactcagtgtcctgaggttttactgcttgggctt
gccagtatcaatactgcatataacctcctccaatatgaaatatcctctttgatatttcct
gcaatgctaatggattcggcaaaaaacagcatcattggcaatctatggcatgtcaaaccc
tacctagttctgcgaggaattcttgatacttatactgatccaaaatgtctcctgagaatt
cttgatatatgtcaagacctaaagatcttaacggccatactggatgcaacacctctctcc
tttagcattaaattggctgctgttgcgtcccaaaaagagctcatagatcttgagaagtgg
ttgagcgaaaatctaattacatataaggatgtttttgttgaggagtgccttaagttcttg
aaggaggtcctcattgatgcagcaaatgatgctacagaaagcactccacaacaatctcga
gctgctgttatgaatatttgccaagaaacatgttctgtatttttcaaggttcttcagacc
cattcagggcagcttatctccgaccaacttgtggaagaaataaagaggctgcagatggtt
tccaacccaaagagtgaaagtgctgtagttacagatatgataactcccgagggaagttca
gatgacatagaggcagaggcgaatacttacttccatcaaatgttctctggacagttgagc
attgactcaatggttcaaatgcttgcacgcttcaaagaatcatctgacaagagagagctg
tcaatatttaactgcatgatttccaatctgtttgaagagtacaagttctttcccaagtat
ccagataagcaactgaagttagctgctgtactctttggctcccttataaagcaccagctt
gtcactcatcttgcacttggtattgccttacgcggggttcttgatgccttgcgtaaatct
gttgactcaaagatgtttatgtttggtacgaaggccctggagcagtttatggaccgttta
attgagtggccgcagtactgcaatcatatattgcagatttcacatctgcgtgtgtcacac
tctgagttggttgctataattgagagagcacttgcaaagatttcgtccagtcacactgag
tcaaatggtggcgactctgttgcaagtgaacaacaagcttctggaccagcatctgcagat
agcattgaggcctccgaggcatcatggcagttgatgggttcaacttcctcacaattagga
aggcagctttcttcatttcaactgcagcagaggcatcaagggtttcttggcgagaggctt
aaagcatctacaacatctgttagctatagcaagcctcctctttctcaaactgcgcaaact
tcacttgccttgacaactgttgattcttctactactcagaaggtaactccgttgcagtct
tcacaagcatcatctcatcattctactaatgtggcaactactgtatcctctcctggcttt
ttacgtcctcgaagtttagctctaggtatgctacggcaacattcgcccgccattggtttt
ggggctgcattaaacattgaaacactcgtagcagccgctgaacgaagagatactgttgag
gccccctcatcagaagttcaagacaaaattttattcatgatcaataacatttcaacttca
aatatggatgcaaaggcaaaagagtttgatgaagtcttgaaggaagatcactatccttgg
tttgcacagtatatggtcatgaaaagggctagtattgaaccaaattttcatgacctgtat
ttgaagttctttgacaaagtcaattcaaaagtgctggataaggaaatcctaaaagccact
tatgagaactgcaaggttttgttgggatcagaacttataaaatcaagctcagaggagcgc
tccttgcttaaaaatcttggcagctggcttggaaagttgaccattggtcggaacaaatca
ctacgagcaaaagaaatagatccgaaagtcctaataatagaggcatatgaaagggggttg
atgattgcagtaattccattcacttcaaagattttggaaccatgccagtcaagtatagca
tatcagcctccaaatccctggactatggggatccttggtttacttgctgagatctataac
ctaccaaacctcaaaatgaacctaaaatttgatattgaggtgttattcaaaaatcttgga
gtggacatgaaagaagttaaacccacttcacttcttaaagataaagttcgtcaggtggaa
gggaatccagatttttcaaacaaggatgtcacttcatctcaaccaccagtcattgcggaa
gtctcatcggggatcattcctacagtgaatcatgtagagctccaacctgaggtcaatagc
acgtcacgcacaatgaatcttccgaatatacttaatcagtatacagctcctctgcatctt
gcttcaaataccatgatggaggatgacaaagttggggctttaataatgcccgaacatgtt
ccggctgcacagggaatgagtcaagtttcaccatccccatcccctgccccatctccatcc
ccatctccgttttctcttagtcagcttctgacaataattccaactgctgattcttacatc
agtattaacccaaagcttagttctttgggctcacaattgcaataccacaggatcattcac
ttggctatggatagggcggtgagagagatcatatctgctgttattcagagaagtgttact
atagctagccggacaacaaaggaacttatcttaaaggactatgttatggagtcggacgat
aatgtcatatctcgttctgcgcgcttaatggttggcactttagccggaagtttggcccat
gtcacttgcaaggaacctcttcgtgtggccctgacgaatcacctccggagtctacttcag
gccttaaatagtaacaatgaaaataatgagcagataattcagattcttaccaatgatcat
cttgatcttggctgtgcagtaattgaagatgtggcatcacaaaaggctgtggagatgatt
gatggagaaataggtccctcatttgctgccctaaggaagcaaagggaagggactggatcc
tattatgatgcttttacttattctcaaggtccattttcacgtgtcccagaggcacttcgt
cctaagcccggtcgcctgtccctcgcccaacagcgtgtttatgatgacttcatcaagatt
atatggcacaaccagtccagtcagaattcaagtgctgggcctactggacaacctggtatg
agtgggagtacaggtaactctagtgttcctcgagcatacagttcaagttcagtcccattg
aactccagtggcttctcaacttctcaagtagctccattcagctcagtagctcagccattg
gatctgatatccgaagagtcagatcgtggttcttcacaacttcctagtggtcatcccact
caagttggaacaagtgacactgctattcaacatggtggcggaataaattctgttgtttcc
ccatttcctgttagcgttacttcaagtgatctcccaacagtcgatgcaccagtcacaacc
aaagaattgggcgctatagtaccaccttcacctacagcagcagctgaccgtttgggaaca
gctatacctgaatccctgttgactactggtgatgcattagataggtatcaacaagttgca
ctcaagcttgaagccttgatagctaaagatgctagagaaacagaaattcagggagttgtt
tctgaggtgcctgatatcatactgagatgcataagccgagatgaggctgcactagctgtg
gcacagaaggttttcaaaagtttgtatgagaattcatcaaatggtgtccatgtcacctcc
catctggcaattttagctgcaatacgtgatgctagcaaacttgttgttaaagaattaact
agctgggtaatttactcagatgaagagaagaagtttaacaaagaaataacaatcggcttt
attcgttctgagttgctaaaccttgcagagtacaacgtccatctagcaaaacttattgac
gggggaaggaataaagctgcgacagagtttgccatatcacttgtccaatcatttatttct
caagatgctggcgtaagcatgtcagagctgtacaatcttattgacgccttatcaaagtta
gcaatgaggccggggtctccagaatcattgcagcagttgatagaagttgccaggaacaat
gttcacaatgcacctaatctcactgctaacaaggatgagaaggctagacagttgagggat
aaaaaggttatatctggccgtaattttaccaacaaagaggaaattagtgctaatgaagct
gcagctgcagatcctcctggtttccaagatcaggtttctgttctctactctgagtggtgt
cagatttgtgagcatccagttacaaatgatgctgcatatggtcattacatatcgcaattg
caacagagtggtttacttaagggtgatgatatcactgaccgtttcttccgtattctaacg
gagctttctgttacacattctcttgtctccgagcaagttatgactccaagtgcgatgtca
cttcattcacctcaacaaatccagcagctttcatatattccaattgatgcatatgcaaag
cttgttgtcctgattctaaagtattcctctgtggatcaaggaccaagtaaatctgtttta
cttcccaagattttgtcagtgacagtaagagccattcaaaaagatgccgaagagaagaag
ctgtcttttaacccgaggccatacttccgattatttattaattggctattggatcttgct
tcacctgaccctctcctggacagtgctaactttcatgtattgacttcttttgcgaatgct
ttccatgcgttacaacccttgaaagttcctgcctggagttttgcatggcttgagttggta
agccatagaagcttcatgccgaaattgttgatgtgcaattctccgaagggctggccattc
tttcaacgtttacttgttgatttgttcaaattcatggaaccctatttgagaaatgctgag
cttggagagccggtacattttctgtacaaaggcactttgagggtgctgcttgtactgttg
catgacttccctgaatttctctgtgactatcacttcagtttttgtgatgtgattccatcc
agttgcatccaaatgcggaatgtcattcttagtgcatttccgcgcaatatgagactccct
gacccttctactcccaacttaaagattgatctactgcctgaaatcacacaatctcctcga
attctatctgaagttgatgctgcccttaaagcaaagcagatcaaggctgagattgatgag
tatctcaagactaggcctgaaggatcttcttttttagctgatctaaaacagagattgctg
ctgccacaaaatgaagcaaacctagctggaactcgttataatgtacctctgattaattca
ctagttctttatgtgggcatgcaggctatacaacaattgcagagcaaatctgctcctcaa
cttgcatccactcagcagatgagccatatacctcctatggacatttttctggttggcgca
gctatggatatcttccagagtcttatcaaaaacttggataccgaaggacgctatcttttt
cttaatgcagttgctaaccaactgcggtatccaaacaaccatacacattacttttccttc
gttcttctctacttatttgcagagactagccagtcgcaggaaatcattcaggagcagata
acaagggtactgttggagcgcttaatagttaaccgtcctcatccttggggtctgcttatt
actttcattgagctgatcaagaatccacggtacaacttttggaatcggccttttacacga
tgtgcaccagagattgagaagttatttgagtcagtatcaagatcctgtggtggtcctaaa
gcagtcgacgatggaattgtctccagtgttgtttctgacggcaaccactga

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