KEGG   Typha angustifolia (narrow-leaf cattail): 140771187
Entry
140771187         CDS       T11061                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140771187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tang03041]
    140771187
Spliceosome [BR:tang03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    140771187
 Complex B
    140771187
 Complex C
   U2 SnRNP specific factors
    140771187
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd Desulfoferrod_N PTPlike_phytase
Other DBs
NCBI-GeneID: 140771187
NCBI-ProteinID: XP_072968725
LinkDB
Position
11:join(1627944..1628117,1628216..1628323,1628811..1628915,1630876..1631018,1631425..1631521,1631933..1632094,1632591..1632662,1633575..1633724,1633923..1634000,1635094..1635222,1635455..1635601,1636045..1636191)
AA seq 503 aa
MSSTLLEVTRAAHEDVERLERLIARELQREAENNRDRLFQNHRVRHMIDLVISTTDKLVY
IYEDKDNARKDEIAALGGQGANGLFSAFYERLKEIRDYHRRHPAARVVDATEDYEELLKE
EPHIEFSGEEAFGRYLDMHELYNEYINSKFGALVEYTAYLDSFSQTSNIPFNLKLTRQYR
EYLEHILEYLISFLERTQPLQDLERIFSKLENEFDEQWADGKVPGWENNDLENGHASQES
VIDLDYYNTVEELMEVGPEKLKEALVALGLKVGGTIQQRAERLFLTKHTPLDQIDRKHFV
KGSRTLVQNGAPVQSGSKKAIALMEAKMQRLCEVLKETIIQTKENVEKKQALTYEEMEAE
REEEEIQADTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWG
RRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIQEAKELWERIQERQGLNKWRPDLEEE
YEDREGNIYNKKTYADLQRQGLI
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgtcttctactctcttggaggtgactcgggcggcccacgaggatgtggagcggcttgag
cggctaatcgcgagggagctccagcgggaggcggagaacaatcgggatcgcctcttccag
aatcaccgcgtacggcacatgatcgatctcgtcatatccaccaccgataagctcgtttat
atatacgaggacaaggacaatgcgaggaaggatgagattgcggcacttggaggacaggga
gcgaatgggttgtttagcgctttttacgaacgcttgaaagagattcgtgattatcataga
cgtcatccggctgcacgcgttgttgatgcaactgaagattatgaagagttactcaaggaa
gaaccacacattgagttcagtggcgaggaagcatttggccggtacctcgacatgcatgag
ttatacaatgagtatatcaattctaaatttggagcgcttgtggagtatactgcttatttg
gattctttttctcagacatccaatattcctttcaatctaaagctgacaaggcaatacaga
gaatatctggagcatattttggaatatttaatatcatttttagagcggactcagcccttg
caagatcttgagagaatattttcaaagttggagaacgagtttgatgagcagtgggctgat
ggtaaggtacctggatgggagaacaatgatttggagaatggccatgcttcacaagagtct
gtgatagatcttgattactacaataccgttgaagaacttatggaagtgggtcctgagaag
cttaaagaggccttggttgctcttggattgaaagtaggtggtacaattcagcagcgtgca
gagcggcttttcttaacaaagcatacaccattagatcaaatagacagaaagcattttgtc
aaaggttcacgtactctggtgcaaaatggagcacctgtacagagtgggtctaagaaggca
attgctttaatggaagctaagatgcaacgactttgtgaagtcttaaaagagaccattatt
cagacaaaagaaaatgttgaaaagaaacaagctttgacgtatgaagaaatggaagcagag
cgtgaagaggaggaaatacaagctgatactgaaagtgatgacgaagagcagcagatctac
aaccctctcaagttacctatgggttgggacggcaaacctatcccttactggctatacaaa
cttcatggtcttggtcaggaatttaagtgtgaaatatgtggcaaccatagttactgggga
aggagggcatatgagcgtcattttaaggagtggcggcaccagcatggaatgcgttgtctt
ggtatacctaacaccaaaaacttcaatgaaataacatccattcaggaggcaaaagaactg
tgggagagaatacaagagcgtcaaggattgaataagtggcggccagaccttgaagaagag
tatgaagacagggaaggtaacatctataacaagaagacttatgctgatctacaacggcaa
ggcctgatctaa

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