KEGG   Typha angustifolia (narrow-leaf cattail): 140771760
Entry
140771760         CDS       T11061                                 
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    140771760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140771760
Enzymes [BR:tang01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     140771760
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     140771760
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 140771760
NCBI-ProteinID: XP_072969528
LinkDB
Position
12:join(8997443..8997466,8997851..8998020,9000356..9000515,9000627..9000935,9003177..9003416,9003571..9003753,9006572..9006734,9007490..9007677,9008095..9008358,9009672..9009760,9009838..9009985,9010100..9010315,9010456..9010764,9010853..9010994,9011380..9011585,9013267..9013469,9013589..9013787,9013871..9014148,9015833..9015973,9016175..9017018,9019101..9019637)
AA seq 1670 aa
MAGARSDEAASETVESVHFSFYSPEEVRKISVKKITRPDLLDVKSTPVPDGLYDPALGPL
NDTDPCKSCGQLSVRCPGHCGHIDLAKPLYNPLLFRSLQNILQITCFYCHKFRLNEEKVQ
RYASELDLIIRGDIVEARNLETRSWSELFFPEEDAVKYAADHIGETCPDATGSKKQTWTS
LQYTEALSILSKLTRNKPKKCSNCGSRNPKITSPTFGWLNKDTLASDIRSNLIIESNLDL
SSSEAQNAEVQQSEGDTLSHMDEEPLPTQKTNEAKNQLKSLPPEYIKKMLSSGQKHLLPA
EAETVLRGLWENEAKLCMLICDIQQKGLSLCQRKKGYMMFFLKTLLVPPNKFRPPAGSST
RGVLEHPQNVLLSKVQESNIALRNAIGLDPNHPDILRRWMDLQNSVNVLFDSSKGFVKSE
REVNGYRQLLEKKDGILRQKMMGKRVNFACRSVISPDPYLRVDEIGIPPCFALKLTYPER
VTPWNAKELRQAVINGADIHPGATHYKDKESMYKLQAGTNRRYATSKKLLASRGIVTQQG
KGPESESEDKFIIRHLRNGDTVVANRQPSLHKPSMMAHRVYVLKEDKTIRLHYANCSTYN
ADFDGDEMNVHFPQDEVSRAEAAIIVDANKQYIVPTSGNPIRGLIQDHIISAVLLTKLDT
FLTHDEYHQLLYSCLPASCRNSQVARLEKKVSVIHSSDEIHPLPPAILKPIPLWTGKQVI
TAILNYITKGRPPFTAECKGRIPREYLQNNHPEGKNSKDEGREDLSELILCIYDNELIKG
IIDKNQFGKYGIVHTVHELYGADAAGILMSMFSRLFTLFLQMHGFTCGVDDLLLIENLDT
QRRRILQKSEIYSEEVHMRFTGTMESDSDPVKLQREVEKVIRRNGEAATISLDRMMSSTL
NNVTSEVNKFLFPRGLRKPFPENCLSLMTTTGAKGGLVNMTQISSLLGQQELEGKRVPRM
VSGKTLPCFPPWDISARAGGFIGDRFLSGLRPQEYYFHCMAGRDGLVDTAIKTSRSGYLQ
RCLIKNLECLKVSYDQTVRDVDGSVVQFMYGEDGVDVLKCSFLSEFKALADNRAVVLDKI
SGHLVDGHLSDATGYIKELPSVLREKATSFARLPKEQQRCRHDIKRKDIIKLLNVKYLLS
LAGPGEPVGVIAAQSVGEPSTQMTLNTFHFAGRGDMNVTLGIPRLQEILMTASEDIRTPV
MKCRVLDRVTREDAESVAAKLRRICVADVVESMEVCTVPFSIRGNQVSTIYKLKMKLYRS
ELYPSYSDLSLEDCQRTLRTAFVDAMEEAIQKHLDMIKKISDISVVISKDDSSLSNEVDE
EEHIGRSGGEEKDDGVTGGGDDDETDDEQGTDSEKRKRQASDEMEYEDGLEKDNTTIVEE
HDGETQTGFESEIDQLEADEDYTVGGEVPNEIEAETPDSPSKSGHTSMSELGNKDRKSVE
KDKKRKSESKKTTTKPKRSSKKPERTIFVEAKDLNFEVHYIFTTGTRILLAEIAQKTAKR
VNIKESTNIERCSVVEEKKGESLTVQTAGVNFQTFWDLEDYLDVNRIVSNDIHAMLNTYG
VEAARATIIQEVKGVFEAYGILVNIRHLNLIADFMTFHGGYRPMNRVGMGEYNTSPFGKM
TFETATKFIIGSAFHGEVDTLQSPSASVCLGQPVKMGTGSFDLMQNLQLQ
NT seq 5013 nt   +upstreamnt  +downstreamnt
atggccggcgcgcgatccgacgaggcggcatcagagactgtggagtctgtccactttagt
ttttacagtccggaggaagtgcggaagattagcgtaaagaagattacgaggcctgatctc
cttgatgtcaagagcactcctgttccggacggattgtatgatccagcattgggtcctcta
aatgatactgacccctgcaaatcttgtggtcagctttccgttcggtgcccaggacattgt
ggtcatattgatcttgcaaaaccactttataaccctttgctttttaggagtcttcaaaat
attcttcagattacttgcttctactgccataaatttaggttgaatgaagaaaaggtgcaa
agatatgcttcagaactggaccttattataaggggtgacattgttgaggctagaaattta
gaaactcgctcatggagtgagttattttttcctgaagaggatgctgtgaaatatgctgct
gatcatattggagaaacatgcccagatgcgacaggctcaaagaaacagacatggacatcc
cttcaatacactgaggcgctctctatcctttctaaattaacaaggaataaacctaagaaa
tgctcaaactgtggtagtagaaatccaaaaattactagtccaacatttggttggctcaac
aaggatacgctagcttctgatataagaagcaatctgataatagagtctaatctggatctg
tcatccagtgaggcacaaaatgctgaagttcagcaatcagagggtgatactctttcgcat
atggatgaggagccgttgcctacgcaaaaaacgaatgaagctaaaaaccaattaaaaagt
ctgccgcctgaatacattaagaaaatgttatcttctggtcagaagcatctgttacctgct
gaggcagaaactgttttaagaggattatgggaaaatgaggctaagctctgcatgcttata
tgtgatatacagcaaaaaggtctaagtttgtgtcaaaggaagaaaggctatatgatgttt
tttctgaagactcttcttgttccaccaaataaattccgtccgcctgctgggagctcaact
cgtggggttttggaacacccacaaaatgttttactaagtaaagtacaagagtccaacatt
gctttacgaaatgcgattggtcttgatcccaatcatcctgatattttgaggagatggatg
gatcttcaaaacagtgtcaatgtgttgtttgacagtagtaagggctttgtgaaaagcgaa
agggaagtaaacggttatcgtcagttgttggagaaaaaggatggtattctgcgacagaaa
atgatgggaaagagggttaattttgcatgtcgttctgttatatctccagacccttacttg
cgagttgatgaaataggaattcctccttgttttgctctgaaattgacatatcctgagaga
gtaacgccctggaatgccaaagaactacgtcaagctgtcattaacggtgcagatattcat
cctggagctacacattacaaggacaaagaaagcatgtataaactacaagcaggaacaaac
aggcgctatgctacatcaaaaaagttacttgcatcgagaggaattgttactcagcaaggc
aagggcccagaatctgaatcggaagacaagtttatcattcgccatttacggaatggggac
actgtagttgctaatcgacagcccagtctccacaaacctagcatgatggctcaccgtgtt
tatgtactgaaagaggataagacaattcgcttgcactatgctaattgcagcacttacaat
gctgattttgatggagatgaaatgaatgtacacttcccacaagatgaagtttctcgtgca
gaagcagccatcattgtcgatgcaaataagcagtacatcgtcccaacaagtggaaacccc
atcaggggcctgattcaggatcatatcataagtgctgtccttctgacaaagttggatact
tttttaacccatgatgaatatcatcagctgctctattcttgtctgcctgcttcctgccga
aattctcaagttgctaggcttgagaagaaggtttctgtcattcattcgagtgatgaaata
catccactccctcctgctatattaaagccaatacctctgtggactgggaagcaggtaata
acagcaatcttgaactatatcacaaaaggtcgcccaccttttactgctgaatgtaaaggt
agaataccacgggaatacctgcagaataatcatcctgaaggaaaaaactcaaaggatgaa
ggcagagaagatctttctgaacttatattgtgtatttatgataatgaactcataaaggga
ataattgacaaaaatcagtttgggaaatatgggatagttcatacagttcatgagctatac
ggtgcagatgctgcagggattttgatgtctatgttcagtcgtttattcacattgtttctg
cagatgcacggatttacttgtggagtagacgatcttctacttattgagaatttagatact
cagcggagaagaatactacagaaaagtgaaatatacagtgaagaggttcacatgcgtttt
actggaactatggagagtgatagcgacccagtaaagttgcaaagagaggttgagaaggtc
atacgtaggaatggagaagctgcgacaattagcttggatagaatgatgtctagtacctta
aataatgtgacttcagaagtgaataaattcttatttcctcgtggactacgaaagcccttc
ccagaaaactgcctctctcttatgaccacaacaggagctaaagggggtttggtcaatatg
acacaaatatcttctttgttaggacaacaagaattggaaggaaaacgggtcccacgtatg
gtctctggcaaaacactaccttgctttcctccctgggatatttcagctagggctggtggc
ttcattggagatcgatttctctcgggtcttcgccctcaagaatattatttccactgcatg
gctggtcgtgatggattggttgacacagcaatcaagacatctcgcagtgggtacctccaa
agatgtctaattaaaaaccttgaatgtctgaaagtttcttatgatcagacagtacgtgat
gtagatgggtcagttgtgcagttcatgtatggggaagatggggttgacgtcctcaaatgt
agctttctatccgagtttaaagcgcttgctgataatcgtgcagtagtgctggataaaatt
agcggtcaccttgtggatggacatctttcagatgctactggttatatcaaggagttaccg
tctgttttgagagagaaagcgactagctttgctcgtcttcccaaagaacaacagcgctgc
cgtcatgatatcaagcgaaaggacataattaaactgttgaatgttaagtacttactaagt
cttgctggtcctggtgagcctgttggagtgattgctgcacagtcagttggtgaaccatct
acacagatgacgctcaacactttccattttgctgggagaggcgacatgaatgtgacactt
ggaattccacgtttacaagaaatattgatgacagcatcagaggatattcgtactccagtt
atgaaatgccgggttcttgacagggttactagggaggatgctgaaagtgttgctgctaaa
ttaaggagaatttgtgtggcagatgttgtagagagtatggaggtctgcactgttcccttc
tcgattcgtgggaaccaggtttctaccatttataagttgaaaatgaagctttaccgatct
gagctttatccctcttactccgacctttcattggaggattgccaaagaaccctgagaaca
gcatttgtggatgctatggaggaggccatacagaaacacctggacatgataaaaaagatc
agtgatatcagtgttgttattagcaaggacgatagtagcttgtcaaatgaggtagatgaa
gaggaacatataggcagatcaggtggagaggaaaaggatgatggtgttactggtggtggt
gatgatgatgaaacagatgatgaacaaggtactgattctgaaaagaggaaaagacaagcc
agcgatgaaatggaatatgaagacggtttggaaaaagataacactaccattgtggaggaa
catgatggagagacccaaactggatttgaaagtgaaattgatcaactagaggctgatgaa
gactacacagtgggaggagaagttccaaatgaaattgaggcagaaacacctgacagccca
tccaaatctgggcatacttccatgtcggagcttggaaataaggatcgtaagtcagtagaa
aaagataagaagaggaaatcagaatccaagaaaacaacaacaaagccaaaaagaagcagt
aaaaagcctgaaaggactattttcgtggaagctaaggatttgaattttgaggtccattac
atcttcacaacaggaactcggattttacttgctgagattgctcagaaaacagcaaagcgt
gtcaatatcaaggagtcgacaaatattgagcgttgttcagtggttgaagagaagaaagga
gaatctcttacggtgcaaacagcaggagtgaatttccaaacattctgggacttggaagac
tacttggatgtcaacagaattgtctcaaatgatatacatgcaatgctcaatacatatggt
gtagaggcagcaagagctacaatcatacaggaggtgaagggtgtgtttgaagcatatggg
atccttgtaaatatccggcacctgaatcttattgcagatttcatgactttccatggtggc
tatcgtccaatgaatagggtggggatgggtgaatataacacctcaccatttggaaagatg
acgttcgaaacagcaaccaagttcattattgggtcagctttccatggagaggtagataca
ttgcaatccccatcagctagtgtctgccttggccagccagtgaagatggggaccggctct
tttgatttgatgcagaacttgcagcttcaatga

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