Typha angustifolia (narrow-leaf cattail): 140771932
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Entry
140771932 CDS
T11061
Name
(RefSeq) uncharacterized protein
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140771932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140771932
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140771932
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Gene cluster
GFIT
Motif
Pfam:
ARM_TT21
Coatomer_E
Motif
Other DBs
NCBI-GeneID:
140771932
NCBI-ProteinID:
XP_072969872
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All DBs
Position
12:complement(join(7862724..7864637,7865296..7865367,7865520..7865606,7865717..7865899,7867643..7867729,7869696..7869884))
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AA seq
843 aa
AA seq
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MEGRDPSAAPSAAGKEGSLEEDRLLSVTAVLAKDAAFLFQSRRYAECVDVLRQLLLKKED
DPKVLHNIAVAEYFRDGCPDPRKLLDVLGKVKRRSEDLARASREQSEAANGIGSNVISGS
RGSTTVLHQFSSANNSIIAYADEFDTSIVTFNSAVIFYHLHDYAHAVSVLEPLYQNIEPI
DETTALHVCLLLLDIALACHDATKAADILQRLERCFGVGSILNHNDNGSIGQQLSSNQLK
VTAKSNTAPDASGSDSNASANENPLVGNLSDDALEYETLYSTLDSGNQNLGRPALNDLSK
ASADVAASAADLKLKLQLYKVRLLLLIRNLKVAKRELKLAMNMARGRDSSAELLLKSQLE
YARGNHRKAVKLLSTPGNRTEKAMVTMFYNNLGCIHHQQRSHHTSGWFFTKALRHSSSFR
LEKPLKLATYSQDKSRLISYNCGLQHLICGRPFIAARCFREAIPLLYNRPLFWLRFAECC
LLALEEGLLSSATASPFKGEITIHVVGSGKWRQVVVNSVNSRSSYSDSRGGDGMVSDENL
GLLSLSFARQCLLNAQLLLDTPEQKTAKPSSMTAASDSDTYSEATSISIKSSNQKNTTST
DLKGSNSSASTLTTANGESKGGASSNNTLQCSVASYESICLKENHKIKQAVLADLAYIEL
CLMNPLRALHAAKAFQQLPGCSRIYIFLSHVYAAEALCHLNRPTEAAEQLSIYILDGNNV
ELPYSNEDRENWFIEEGGDGEDLNCSATLKPTFEEPQHLRSLKPEEARGVLFANLAVMFA
VQGDLEQASYFAKQSLASLPNDPRSVLAAVYVDLRQGKTQEALPKLRQCRRVSFLASNPT
VSS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtcgggatccgtcggcggcgccatcggccgcggggaaggaggggtctttggag
gaggacaggcttctttcggtgacggcggtgctcgcgaaggacgccgctttcctcttccag
agccggcgctatgcggagtgcgtcgatgtgttgaggcagctcttgctcaagaaagaggac
gatcccaaggtccttcataacatagctgttgcagaatattttcgtgatggttgtcctgat
ccaaggaagctacttgatgtccttggcaaggttaagaggagaagtgaagaccttgctcgc
gcatctagagaacaatcggaggctgcaaacggcataggaagtaatgttatttcgggctct
agaggaagtacaactgtactgcatcaattctcttcggcaaataatagcatcattgcttat
gcagatgaatttgatacatccattgtgacatttaatagtgcagttatcttctatcatctg
cacgattatgcacatgcagtatcagttctagagccattataccaaaatattgaacccatc
gatgagacaactgctcttcatgtatgcctgctcttactggatattgcgttagcttgccat
gatgcaacaaaagcagcagatatacttcaacgcctggagagatgctttggtgttggtagc
atattaaatcataatgataatggaagcataggtcaacagctatcttcaaaccagctgaag
gttactgcgaaaagcaatacagctccagatgcatctggttctgattcaaatgccagtgcg
aatgagaaccctttggtggggaatctttctgatgatgcattggagtatgaaaccttgtat
tcaactttggatagcggaaatcagaacttgggtagacctgccttgaatgatctctcaaag
gcatcggctgatgttgctgctagtgcagcagatctgaaactgaaattacaactatataag
gtcagactcctgcttctcattaggaacctgaaggtcgcaaagcgtgagctcaagcttgcg
atgaatatggcacgtggtcgagattcatctgcggagcttcttttgaagtctcagttagaa
tatgcccgtggaaaccatcgtaaggctgtgaaactcttgagtacacctggtaatcgaaca
gaaaaagcaatggttactatgttctataacaatcttgggtgcatacatcatcagcaaaga
tcccatcatacatcaggctggttttttaccaaagccctgagacacagctcatcatttcga
ttagagaaaccgttgaagcttgcgacctattcacaggataaatctcgtcttatttcatac
aactgtggtctccagcatttgatctgtggaaggccatttattgcagctcgttgttttcgt
gaagctattccactgttgtataatcgcccacttttctggctccgctttgctgaatgctgt
ctattagcactggaggagggactcttgagttcagcaactgcatctcccttcaagggagag
attacaattcatgttgttggatcaggcaaatggcggcaagtggttgtgaactctgtgaac
tcaagaagtagctattcagattccagaggaggtgatggaatggtctctgatgaaaacttg
ggcttgctgtcactttcatttgctcggcaatgcctactcaatgctcagctattactggat
actcctgaacagaaaacagcaaaacctagttctatgactgctgcttcagattctgatact
tatagtgaagcaacatctataagcatcaagagttcaaaccagaagaatacaacaagtaca
gatttgaaaggatcaaattcatcagcctccacgctaaccactgcaaatggtgagtccaag
ggaggtgcaagttcaaacaacactttgcagtgttcagtcgcatcatatgagagcatctgc
ttaaaggaaaaccacaaaattaagcaggctgttcttgcagacctagcttacatagaattg
tgcttaatgaatcccttgagagcactacatgctgcgaaggcatttcagcagcttccaggc
tgctctagaatatacattttcctcagccatgtttatgcagctgaagcactttgtcacctg
aaccgacctacagaagctgcggagcagttgtctatttatatcttggatgggaacaatgtt
gagttgccatacagcaatgaagaccgagaaaactggttcatagaggaaggtggcgatggc
gaggatttgaattgctcagcaactttgaaaccaacctttgaagaaccccagcatttgaga
agtctgaagcccgaggaggctcgtggggtgctttttgcaaaccttgctgtcatgtttgcg
gtgcagggagatctcgagcaagccagctattttgcgaagcagagtcttgcctccttgccc
aatgacccaagatcggtgcttgctgcagtatatgtggatcttcgacaaggaaagacgcaa
gaggctctccctaagttgagacagtgtaggcgtgtgagcttcctcgcttccaatccaacc
gtcagcagctaa
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