Tatumella sp. TA1: EFZ10_00535
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Entry
EFZ10_00535 CDS
T09934
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tatu
Tatumella sp. TA1
Pathway
tatu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tatu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EFZ10_00535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tatu03021
]
EFZ10_00535 (rpoC)
03400 DNA repair and recombination proteins [BR:
tatu03400
]
EFZ10_00535 (rpoC)
Enzymes [BR:
tatu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EFZ10_00535 (rpoC)
Transcription machinery [BR:
tatu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EFZ10_00535 (rpoC)
DNA repair and recombination proteins [BR:
tatu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EFZ10_00535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QGX90252
LinkDB
All DBs
Position
101867..106087
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELATPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAVQALLKNMDLVQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEFTKTDEGELVSSTSIVDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAAKTEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMENLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLMDEHICDVLEENSVDSIKVRSVVSCATDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIRL
SNAKSVTNSAGKLVVTSRNTELKMIDEFGRTKESYKVPYGAVMAKGDGEQVEAGDTVANW
DPHTMPVITEVNGFVRFVDMNDGQTITRQTDELTGLSSLVVMDTADRTSGGKDLRPAIKV
VDAKGDDVMLPGTDMPAQYFLPGNAIVQLEDGVQISSGDTVARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSTDFLEGEQAEVSRILIANRELEANGKISATFHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERMRRRQQGETPV
APQVTADEASASLAELLNAGLGGSDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctaaaagcgcaaaccaagaccgaagagtttgatgcaatt
aagatcgctctggcctcgccagatatgatccgttcctggtcattcggtgaagttaaaaag
ccagagacgattaactatcgtacctttaaaccagagcgtgacggtcttttctgtgcacgt
atctttggaccggtaaaagactatgagtgcttatgcggtaagtataagcgccttaaacac
cgtggtgtgatctgtgaaaaatgtggtgttgaagttactcagactaaagtacgccgtgag
cgtatgggtcacattgagttagcaacgcctactgcgcatatttggttcctgaaatcatta
ccttcgcgtatcggtttattactcgatatgcctttgcgtgatatcgaacgcgtactgtac
ttcgaatcttatgttgtgatcgaaggcggtatgactaatcttgaaaagcgccagatccta
actgaagagcagtatctggatgccttagaagagtttggtgacgaattcgacgccaagatg
ggtgcagaagccgttcaagccctgttgaaaaacatggatcttgtgcaagagtgcgagcaa
cttcgcgaagagctgaatgaaactaattcagaaactaagcgcaagaagctgactaagcgt
atcaagctgcttgaagccttcgttcaatctggaaataaaccagagtggatgatcttaaca
gtactgccagttttaccaccggatcttcgtcctttggtaccgctggacggtggacgcttt
gcgacatcagatcttaacgatctttaccgtcgtgtgatcaaccgtaacaaccgtttgaaa
cgtctgttggatctggctgcgccagatatcatcgttcgtaacgaaaaacgtatgttgcaa
gaagcggttgatgcattactggataacggtcgtcgtggacgtgctatcactggatcgaac
aaacgtcctctgaaatcgctcgccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgttaggtaagcgtgtcgactactctggacgttcagttattactgttggtccatac
ctgcacctgcaccaatgtggtctaccgaagaaaatggcgttggaattgttcaaaccattt
atctacggaaaattagaattacgcggtcttgcgacaaccattaaagctgcgaagaaaatg
gttgagcgtgaagaggcggttgtttgggatatcttggatgaagttatccgtgagcaccca
gtgttactcaaccgtgcaccaacgcttcaccgtctaggtattcaagcctttgaacctgtc
ctgatcgaaggtaaagcgattcagcttcacccgttggtctgtgcggcgtataacgccgac
ttcgatggtgaccaaatggctgtgcacgtgccgctgacgcttgaagcgcagttagaagcc
cgtgcgctaatgatgtctactaacaacatcttgtctccagcgaacggtgagccaatcatt
gttccttctcaagacgttgtattgggtctgtattacatgacccgtgatcgtgttaacgcc
aaaggcgaaggcatggttctgactggtcctaaagaagctgagcgcgtataccgtgctggt
cttgctgaactgcatgctcgcgtaaaagtgcgtatcactgagttcactaagactgacgaa
ggcgaattagtatcaagtacaagtattgttgatacgacgattggtcgtgcgattctatgg
atgatcgtgcctaaaggtcttccttactcaatcgttaaccaagcgttaggcaagaaagct
atctctaagatgcttaacacttgttaccgtatcctaggcttgaaaccaacagttatcttt
gctgaccaaactatgtacaccggttttgcttacgctgcacgttcaggtgcttcagtaggt
atcgatgatatggtgatcccagcagcgaaaactgaaatcatcgctgaagcagaagcggaa
gttgcagaaatccaagaacagttccaatctggtctggttactgcaggcgagcgctataac
aaagtgatcgatatctgggccgcagctaacgaacgtgtctctaaagcgatgatggaaaac
ctgcaaactgagacggtaattaaccgtaacggtgaagaagaacaacaggtttccttcaac
agtatctacatgatggccgactctggtgctcgtggttccgccgcgcagattcgtcagctt
gcaggtatgcgtggtctgatggctaaaccagatggttcaatcatcgagacgccgattacg
gcaaacttccgtgaaggcttgaacgtactccagtacttcatctcaacccacggtgctcgt
aaaggtcttgcggataccgcattgaaaactgctaactccggttacttgacgcgtcgttta
gtcgacgttgcgcaagacttggtcgtgacagaagacgattgtggtactcacgaaggtatc
ctgatgactccggttatcgagggtggcgacgttaaagagccattgcgtgagcgcgtattg
ggtcgtgtaaccgcagaagatgtattgaaacctggtactgcagatattcttgttccacgt
aatacattaatggatgagcacatctgtgacgtattagaagagaactcggttgatagcatc
aaggttcgttcagtagtaagttgtgcgactgacttcggtgtgtgtgcaaactgctatggt
cgtgacctagcacgtgggcatatcatcaataaaggtgaagccatcggggttatcgcggca
caatcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatcaagcatccaagtgaagaataaagggactatccgtcta
agcaatgctaagtcggtaaccaactcagccggtaaactggttgtcacttcacgtaacacc
gaattgaagatgatcgatgagtttggtcgtactaaagagagctataaagttccttacggt
gcggtcatggcgaaaggtgatggcgagcaggttgaagcgggcgataccgttgcaaactgg
gatccgcacacaatgccagttatcaccgaagtaaacggttttgtacgttttgttgacatg
aatgatggccaaaccatcacgcgtcaaactgacgagctgacaggcctctcttcgctggtg
gtcatggacactgcagatcgtacttcaggtggtaaagacctccgcccagcgatcaaagtt
gttgatgcgaaaggtgatgatgtcatgctgccaggtactgatatgccagcacaatacttc
ctgccaggcaatgcaattgtccagcttgaagatggtgtacaaatcagttcaggtgatact
gtagcgcgtgttcctcaggaatctggcggtactaaagatattaccggtggtctgccacgt
gttgctgacctgtttgaagcgcgtcgtccgaaagagccggcgattctggcagaaatcagc
ggtatcatctccttcggtaaagaaaccaaaggtaagcgtcgtttagtgatcacaccagtt
gatggtagcgatccgtacgaagagatgattcctaagtggcgtcagctgaacgtcttcgaa
ggtgagcgtgttgaacgcggtgatgtagtgtcagatggcccagagtcacctcacgacatc
ttacgtctacgtggcgtacacgcagtaactcgttatatcactaacgaagtacaagaagtt
taccgtttacaaggcgttaagattaacgataagcatatcgaagttatcgttcgtcagatg
ttacgtaaggcaacgattgcctctgccggtagcaccgacttcttagaaggtgagcaagca
gaagtttcacgtatcctgatcgctaaccgcgaactagaagcgaatggaaaaatttctgca
acattccatcgcgacttgttagggattaccaaagcgtcactggcaactgagtcatttatc
tctgcagcatcgttccaagaaacgacgcgcgtgttaactgaagcagcagtggcaggtaaa
cgtgatgaattacgtggtctgaaagagaacgttatcgttggacgcttgatcccagccggt
accggttatgcataccatcaagaacgtatgcgccgtcgccagcaaggtgaaacacctgta
gcaccacaagtgactgcagatgaagcttccgcgagcctagcagagctgctaaatgcaggt
ctgggtggttcagacgagtaa
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