Trichoderma atroviride: 25777992
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Entry
25777992 CDS
T10217
Symbol
TrAtP1_008596
Name
(RefSeq) uncharacterized protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
25777992 (TrAtP1_008596)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25777992 (TrAtP1_008596)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25777992 (TrAtP1_008596)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
25777992 (TrAtP1_008596)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_TTP_bind
ARM_Cnot1
Motif
Other DBs
NCBI-GeneID:
25777992
NCBI-ProteinID:
XP_013942349
UniProt:
G9P069
LinkDB
All DBs
Position
4:join(3741432..3741686,3741763..3742087,3742163..3748110,3748188..3748226)
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AA seq
2188 aa
AA seq
DB search
MVPPPQRAGSFSPNPAQTLQTGSNHSPHPSHTGILSAGASPSTSSPTGANSLTKIVVAQV
YLLLSTIKEDKDRAKWELQVEQLRKLIDEHGMEVFSKYFTRLVAGNAPQIFPGLNRPVAN
PGNYHILVGEMRKIAHDVDQATKIAESVESGTEDIFRDFDLSTFMEHFKLDALEKTLLAL
AFKLGSRPDLKTKADAILSTNFPTFMDIISRPDIEAHSDLTPAFISLIIDRFLQYYPPSF
NAASRRDLQNSVAKRYLSVDQAPPSEVLAALDISRVLADRPTNSLARYIQKSGPDSTRDD
ESCFQFLRGRPANIQLGPEQVSAALTYATVSQTPPHDPVVLVSALLRIVPKPFDWTEVVL
CFDQPSARISSAQFLRLYRALLPIAEEPANNFDIQRLWGGSWSEPEAQLSFVSAYASLGP
DQLDATTIPGLERSIKIEDYANSPPNVQERAAVVVKHPLVSVAALSAIFNVALNSVHASQ
SVEAKRLFQEVVVPNLDIFLVSAFEVPRQSWAVMAIDTLNSLFETFLYKRSPEYDFVLDS
LWKKDKEWVVQRLIDAHAVKPVDLPLIFDHAAKHNWLEELVYLPNGFGIDLAAFAHAEGY
LDLSKWAQFNAERSNEIARTLLQFLMIKANLEIQFQRPPDGQPPVKTSTSLQVRTVSALL
QILEDFLPKAPVLDLILVQRHCITAYPRLINYGEGYDDIIDANGKDGNALPQAANSKMEE
HYKKMYGDEIQVRTIVEILDRYKHSRDQLDQDVFACMIHGLFDEYNHYVDYPLEALATTA
VLFGGIISHKLISDLPLKIGLGMILEAVRDHMPDDPMFKFGLQALMQLLVRLREWPGFCK
QLLQIPGLQGTEAFKKAEEIVRDHEEELVRARNGSGTPHGVGFPIDSFANGTGDEQASID
RPAPAFAAISIDPPSAELEFEDPDDETQGKIQFVLNNITEGTLQSMSTELRDMLERRYQQ
WFAGHLVEERAKMQPNYHHVYLELVKQFEDKILWAEVLRETFISVSRMLNSEATLQNSTE
RSHLKNLGGWLGLLTLARDYPIKHRNIAFKQLLIEAHDTKRLIVVIPFVCKVLTQSASSA
VFRPPNPWLMDIIHLLIELYHHAELKLNLKFEIEVLCKGLNLDHKSIEPSGEILNRPAAD
EPDSILVQEQLEAFESLSLNGIGSAVGPGLSPQVPTIPELGPLITIPPTNEMVVSTSRLH
EIVRSALTRALQDIIQPVVDRSVTIAAISTQQMIRKDFIAEPDENRVRTSAINMVKATAG
SLALVTSKEPLRANLTNYMRSLANDLPSGLPEGTIIMCVNSNLDLACSIIEKQAEERAVP
EIEEMLESDLEHRRRHRIQQPNEPYHLTGINRWAMTIPSPYKIQPRPGGLNAEQMAIYED
FARQPRTTSSTVASHAPSASEATRSLANEVLQDTYSTLPNIPTPAETPSIQQLGAQLQPY
APVHNLAAANAMGNGRAAGFQMDVRGLADRVNKLLQELLRVAREAQEDHFVGLPRPHPVL
DVVDALVQLIIKTSQNSEEFAIYAAEQISALIFQQVEDNLTLESLVHVLETLRKISGPAL
NSRVRSLFAQQPGPNFLSLPLLAALIRTDLLDWRNIDLAMSKVLEARKDSSLEFLEHMLD
LTILNNRPIALYTDFVRTLESAWTWICEDPNSTTGQRLKTKLMGSVPAQPPQGPSNAEEQ
SIQHDQLEYVFEEWVHLCNNHNASSKATTIFIQQLQARHVIRNREDFLLFVRIGVDLSVE
RYEHILHTGAIGDAYVATDALAKFIGIFSAVHSATLVSRAAFLDSVLVLVSLILNHHHVK
RGEHLNQRVFFRLFSMLFHEISSVCEELPDDDRCDVMLGVATRLESIGPQHLPGFVFGWL
LLIQHRAFMPVLLQLVDNAGWKPFADLVSQLLGCLSEQLKALNVSDAGKDLSRGTVKLFV
VLHHDFPDFLAANHVRFCAKIPTHCIQLINTVLTATPQQNYGKPIENNKADRLEELKTYP
GLIDEAVATLTEAGLLSVLDQVFQSGPAEEAVAQIVHTITSNAPTETTFGHVAIAANAEL
IGAVVLYAGHHATEQPPPASGSLSISGSEPEVAMLSLLVHELPPEARYYLIASMVNQLRF
PNPHTEFFSQLLQHIFGKDMNDPEETDIRQEITRILLERLVGFWPQPWGLIYTVVEICKN
ERNMFFELPFIRSTPEVAERFASVLQRV
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atggtcccccctccacaaagagcgggatcattctcaccaaatcctgcgcagacccttcaa
actggcagtaaccactcaccccatccatcgcatactggtatcctcagtgctggcgcaagc
cccagcacaagcagtccaacgggggccaactccctgacgaaaattgtcgtcgcccaagtc
tatctcttgctcagtaccattaaggaggataaggatcgtgccaagtgggagctgcaagtc
gagcaattacgaaagctcatcgatgaacacggcatggaggtcttttccaaatacttcacc
cggttggtggcgggcaatgcaccccagatattcccgggcctcaacagacccgttgccaac
cctggcaactaccacattctcgttggtgagatgcgcaagattgcacacgatgtcgatcaa
gccacaaaaatcgcagagtcggtggaaagtggcacggaggacatattccgcgatttcgac
ctgtcaacgtttatggagcacttcaagctcgatgccttggaaaagaccttgttagctttg
gcattcaagcttgggtctcgccctgacttgaaaacgaaagcggatgccatcctatccacc
aacttcccgaccttcatggacatcatctctcgaccggatattgaagcccactctgacctc
acccccgcctttatatcactcatcattgacagatttttgcaatactatcctccgagcttc
aatgcagcctctcgccgagatctccaaaattcggttgccaagcgttatttgtctgtggac
caggcacccccttccgaagtcctggcagccctcgatatcagcagagttctagccgatcgg
cctaccaattccttggctcgctacattcaaaagtctgggccggactctacaagggacgat
gaatcgtgctttcagttcctgcggggtcggccggctaacatccagctcggccctgagcag
gtttctgcggcactgacatatgctacagtcagccaaactccccctcatgatcccgttgtc
ctcgtcagcgcgctcctccgtattgtgcccaaacctttcgattggaccgaagtggtcctt
tgttttgaccagccctcggcacgcatctcttctgctcaattcctacgcctttacagggct
cttttacctatcgccgaggagccagcgaacaatttcgatattcagcgcctgtggggtggc
tcttggagcgagccggaggcacagctgtctttcgtcagcgcctacgcttctctgggccct
gatcaactcgatgctaccacaattcccggtctcgaacggagcatcaagattgaagactat
gcaaattcgcctcctaacgtgcaggaacgtgccgctgtcgtcgtcaagcatccacttgta
tccgtggcggcactgtcggcaatattcaatgtcgccctcaactcagtccacgcatcccag
agtgtcgaagccaagcgactattccaagaggtcgtcgtcccgaaccttgacatcttctta
gtctccgcttttgaggttcccaggcagtcatgggcagtcatggccattgataccctgaac
tctcttttcgagacctttttatacaagcgctcacccgagtacgactttgtgctcgatagc
ctttggaaaaaggacaaggaatgggttgtgcagcgacttattgacgcgcatgcggttaag
cctgtggatctgccgctcattttcgaccatgcagccaagcataactggctggaagagctg
gtgtatcttccaaacggattcggcattgatcttgcagcctttgctcacgcggagggctac
ttggacttgtcgaaatgggctcagttcaatgctgagagaagcaatgagattgctcgaact
ttgttgcagttcctcatgatcaaagcaaacctagagatccagttccagcgaccgccagat
ggccagccacccgtgaaaaccagtaccagtctccaggtgcgaactgtttcggcattgttg
cagatacttgaggacttcctacccaaagcaccagttctcgatctcattctcgtccagcgt
cactgtattaccgcgtacccccgcttgatcaactatggagaaggatatgatgacataatt
gatgccaatggaaaggatggaaatgctctaccgcaagcagccaatagtaagatggaggag
cattataaaaagatgtacggcgatgagatccaagtccgcacaatcgtggagatattggat
cgctacaagcattcgcgggatcagctcgaccaggatgtatttgcctgcatgattcatggc
ctgttcgatgagtacaatcattatgtcgactatccccttgaagctcttgccacaaccgcg
gttctttttggaggaatcatttctcacaagcttatttctgatcttcccctgaagattggt
cttgggatgattttggaggctgtaagggatcacatgcctgatgacccaatgtttaaattt
ggtcttcaggctttgatgcaactcttggtgcgtcttcgggaatggccaggattctgtaaa
cagctacttcaaattcctggcctccagggaaccgaggcgttcaaaaaggcagaggagatt
gttcgagatcacgaagaggagcttgtacgtgctcgcaatggatcaggcactccccatggg
gtgggatttcccatcgattcctttgcgaacggaactggcgatgaacaagccagcattgac
cgtccggcccccgcgttcgcagccatcagcattgatccgccctctgccgaactcgaattc
gaggatccagatgatgaaacccagggcaagatccagttcgtcctcaacaacatcaccgaa
ggtacccttcagtcaatgtccaccgagcttcgcgatatgctcgaacgaaggtaccagcaa
tggtttgctggccatcttgtcgaggaacgagcaaaaatgcaacccaattatcatcatgtg
tacctggaactcgtcaaacagtttgaagacaaaattctctgggccgaggttctccgcgag
acgtttatcagtgtatctaggatgctaaactctgaagcgactttgcagaattccacggag
agatcacatctgaagaatcttggagggtggcttggtctcttgacccttgccagggactat
ccgattaagcacagaaacattgcttttaaacagcttcttattgaggcgcacgatactaaa
cgcctcattgtcgtcatcccgtttgtctgcaaagttttaacccaaagcgcaagctcagca
gttttcagacctcccaacccatggctgatggacatcattcacttattgattgagctatat
caccatgctgaactgaagctcaatctgaaattcgagattgaggtcctatgcaagggcttg
aacctggatcacaagagcattgagccgtctggagagattctcaaccgacctgctgcagac
gagccggatagtattcttgttcaagagcaactcgaggcctttgagagcttgtcgctgaac
gggatcggatcggcggtcggacctggcttatctcctcaagtcccaaccattccggagctt
ggacctctcatcacgatacctcctaccaacgagatggttgtcagcaccagcaggctgcac
gaaatcgttcgatcagctctcactcgcgctcttcaggatattatacaaccagtcgtcgat
agatccgtcactattgctgcgatatcaacccagcagatgattcggaaagatttcattgcc
gaaccagatgaaaaccgcgtacgtacttccgctatcaacatggtgaaggctactgccggc
agcctagctctcgttacgtctaaggaacctctgcgagcaaatttgaccaactacatgagg
agccttgccaacgatctgccatcgggtctccccgagggcaccattatcatgtgtgtcaac
tccaatctcgatctggcttgcagcatcattgagaagcaggctgaagagcgagcagtgccg
gagattgaagagatgctggaaagcgacctggagcacagaaggcggcatcgtattcagcag
ccaaatgagccctaccatctaacaggaataaaccgatgggccatgactattccaagccct
tacaagatacagccgagacctggtggtctgaatgccgaacagatggcgatttacgaagac
tttgcgagacagcctcgcactacctcttccacagtagcatctcatgcgccatctgcatca
gaagctacaagatcgctggcaaatgaggttctacaagatacctacagtaccctgccaaac
attcccacacccgctgagacaccttcaatccaacagctgggcgcgcagctccagccatat
gcccctgttcataaccttgccgcagccaacgcgatgggtaatggacgagctgccgggttt
caaatggatgttcgaggtctggcagatcgagtcaacaagctgctacaggagttactgcgc
gtggctagagaagctcaagaggaccacttcgtcggcctgcctcggccgcatcctgttctg
gatgtcgtcgatgcccttgtacagctcatcattaagacgtcccaaaactcggaagagttt
gctatttatgccgccgagcaaattagtgccctcatcttccagcaggttgaggacaacttg
acgcttgagagtctggtgcacgtactagagactctgagaaagatttctggccctgctttg
aacagccgagttcgttctctgtttgcccaacagcctgggccaaacttcctgagtcttcct
ctgctcgcagcgctgattcggaccgatttgctcgactggagaaacattgatctcgcaatg
tcaaaggttttagaagctcgcaaggacagctcgctagagttcctcgaacatatgctcgac
cttacaatcctcaacaaccggcctattgcgttgtatactgactttgtacgcaccctcgag
tcagcctggacatggatatgcgaagaccccaactctaccactggccagcggctcaagacc
aagctgatgggctcggttcctgctcagcctcctcaaggcccatccaatgccgaggaacag
tccatccaacatgatcagctggagtatgtcttcgaagagtgggtacacctatgcaataat
cataatgcctcaagcaaagccacgaccatctttatccagcagctacaggcaaggcatgtc
atccgcaatcgcgaggactttttattgtttgtgcgcatcggtgttgatctctcggttgag
cgatatgaacacattctacacactggagctattggtgatgcgtacgtcgcaacagacgcg
ctggcaaagtttatcggcatcttctccgctgtacactctgcgacactcgtgtcccgcgcc
gcctttttggactcggttttggtattggtctcgttgatactcaaccaccatcatgtgaag
cgaggggagcacctgaatcaaagagtcttcttccgcctcttttccatgcttttccatgag
atttcctctgtatgcgaagagttgccggatgacgaccgctgcgacgttatgctgggagtt
gccaccagactcgagagcatcggcccacagcatctacctggattcgtatttggatggctg
ttgcttatccagcatcgggcctttatgcctgttttgctgcagttagtagacaatgcagga
tggaagcctttcgcggacctcgtcagccagttgctcggctgcttgagcgagcagctgaag
gcgctcaacgtcagcgatgccggcaaagatctctccaggggcacggtgaaactatttgtg
gtcctgcaccacgatttcccagactttttggcggccaaccacgtcagattttgtgccaag
ataccgacgcactgtattcaactgatcaacacggttttgactgcgactccccagcaaaat
tacggcaagcctatcgagaacaataaagctgatcggctggaggagctgaagacatatccc
ggcctcattgacgaagcggttgcaactctgacggaggctggcctgttgagcgtgcttgac
caggttttccaaagcggccctgcggaagaagcggtggcgcagattgtacacactatcacg
tccaacgctcccaccgagaccacgttcggccacgtggctatcgcagcgaacgctgagctc
atcggtgcagtcgtactgtatgccggtcaccatgctactgagcagccaccgccggcgagt
ggttcactgtccatctcagggagcgaaccagaggttgccatgctatcccttttggtgcac
gagctacctccggaagcccgttattacttgatagccagcatggtgaaccaactaaggttc
cccaatcctcatactgagttcttcagccaactgttgcaacacatctttgggaaagatatg
aacgatcctgaggaaacagacattcgtcaagagattacgcgaatcctcttggagcggctg
gtgggattctggccccagccctggggactcatctacacagttgtagaaatatgcaagaac
gagagaaacatgttctttgaactcccctttatcagatcaacccccgaggttgctgaacgg
ttcgcctctgtgcttcaacgggtataa
DBGET
integrated database retrieval system
