Trichoderma atroviride: 25779202
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Entry
25779202 CDS
T10217
Symbol
TrAtP1_001197
Name
(RefSeq) uncharacterized protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
tatv Trichoderma atroviride
Pathway
tatv03018
RNA degradation
tatv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tatv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25779202 (TrAtP1_001197)
09123 Folding, sorting and degradation
03018 RNA degradation
25779202 (TrAtP1_001197)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tatv03019
]
25779202 (TrAtP1_001197)
03041 Spliceosome [BR:
tatv03041
]
25779202 (TrAtP1_001197)
Messenger RNA biogenesis [BR:
tatv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
25779202 (TrAtP1_001197)
mRNA degradation factors
5'-3' decay
Lsm complex
25779202 (TrAtP1_001197)
Spliceosome [BR:
tatv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
25779202 (TrAtP1_001197)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SpoU_sub_bind
SM-ATX
Motif
Other DBs
NCBI-GeneID:
25779202
NCBI-ProteinID:
XP_013941710
UniProt:
G9P2L9
LinkDB
All DBs
Position
1:join(3312212..3312214,3312277..3312417,3312486..3312536,3312612..3312809)
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AA seq
130 aa
AA seq
DB search
MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVY
VKGNNIKYLRVPDEIIDQVTEQQKNQQGGGFRGGRGGHQSRGDHGGHGGRGGGDRGRGRG
GRGRGRGRGQ
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctcggattgctcaatgccgctcagggccaccccatgctggtcgagctgaag
aatggagagacgctcaacggacacctggtcatgtgcgatacgtggatgaacctcaccctc
aaagaagtcgtgcagacaagccctgaaggagataaattcatgcgtctgccagaagtctac
gtcaagggaaataacatcaagtaccttcgtgttcccgacgagatcatcgaccaagtcacc
gagcagcagaagaaccagcaaggcggcggattccgtggcggtcgcggcggccaccagtca
agaggcgatcacggcggtcacggcggccgtgggggcggcgacagagggcgaggccgtgga
ggcagaggtcgcggcaggggacgtgggcagtaa
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integrated database retrieval system
